View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5336-Insertion-3 (Length: 423)

Name: NF5336-Insertion-3
Description: NF5336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5336-Insertion-3
NF5336-Insertion-3
[»] chr4 (10 HSPs)
chr4 (6-423)||(55663403-55663820)
chr4 (224-423)||(55657390-55657589)
chr4 (160-423)||(52982847-52983116)
chr4 (224-423)||(55619041-55619239)
chr4 (224-423)||(55626345-55626543)
chr4 (224-415)||(54860816-54861007)
chr4 (224-409)||(3671087-3671272)
chr4 (224-404)||(54630322-54630502)
chr4 (308-415)||(54630203-54630310)
chr4 (229-415)||(55637207-55637393)
[»] chr2 (1 HSPs)
chr2 (224-422)||(13403607-13403805)
[»] chr8 (2 HSPs)
chr8 (224-423)||(9891497-9891696)
chr8 (298-397)||(17220158-17220257)


Alignment Details
Target: chr4 (Bit Score: 386; Significance: 0; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 6 - 423
Target Start/End: Original strand, 55663403 - 55663820
Alignment:
Q  6 caaaaacatgtttgagaaacccaataacggagcttattcacatttcacatgattccaccgcttccacgaagatttttcgcggctatcctgaccacggcca 105  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||    
T  55663403 caaaaacatgtttgagaaacccaataacggagcttatttacatttcacatgattccaccgcttccacaaagatttttcgcagctatcctgaccacggcca 55663502  T
Q  106 ataaattttgatttcgaccatacaggagcacaccaaggagtgcatagaccatagaagcgtaggattttacgtttcagatcccgatcttgtctaccatggc 205  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  55663503 ataaattttgatttcgaccatacaggagcacaccaaggggtgcatagaccatagaagcgtaggattttacatttcagatcccgatcttgtctaccatggc 55663602  T
Q  206 ctcgagttagggtctcaccttccaaccaatatgtctcgacgattctaacagccttctcataaatttcaatgtggttgtgactccgcaagttttcaatctt 305  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  55663603 ctcgagttagggtctcaccttccaaccaatatgtctcgacgattctaacagccttctcataaatttcaatgtggttgtgactctgcaagttttcaatctt 55663702  T
Q  306 tcccaatccctcaacatcatctatcatctgagcatacaagttgacatcgccggtgttacaaaagtttttctccgcttctccaacctccagaaaattctca 405  Q
    | |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55663703 ttccaatccctcaacatcatctatcatctgagcatacaagttgacatctccggtgttacaaaagtttttctccgcttctccaacctccagaaaattctca 55663802  T
Q  406 agaccttctaagcagaca 423  Q
    ||||||||||||||||||    
T  55663803 agaccttctaagcagaca 55663820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 224 - 423
Target Start/End: Original strand, 55657390 - 55657589
Alignment:
Q  224 cttccaaccaatatgtctcgacgattctaacagccttctcataaatttcaatgtggttgtgactccgcaagttttcaatctttcccaatccctcaacatc 323  Q
    ||||||||||||||||||| |  ||| ||||||||||||||||||||||| ||| ||  |||||| |||||||||| |||||| ||||||||||||||||    
T  55657390 cttccaaccaatatgtctcaagaattttaacagccttctcataaatttcattgttgtcatgactctgcaagttttcgatcttttccaatccctcaacatc 55657489  T
Q  324 atctatcatctgagcatacaagttgacatcgccggtgttacaaaagtttttctccgcttctccaacctccagaaaattctcaagaccttctaagcagaca 423  Q
    |||||||||||||||||||||||||||||| || |||||||||||| |||||||||||||||||||||  ||||||||||||||||| ||||| ||||||    
T  55657490 atctatcatctgagcatacaagttgacatctcccgtgttacaaaagcttttctccgcttctccaacctttagaaaattctcaagaccatctaaacagaca 55657589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 160 - 423
Target Start/End: Original strand, 52982847 - 52983116
Alignment:
Q  160 aagcgtaggattttacgtttcagatcccgatcttgtctaccatggcctcgagttagggtctcaccttc------caaccaatatgtctcgacgattctaa 253  Q
    ||||||| ||| ||| |||||||||| || ||||||| |||||||| | ||| ||| |||||| ||||      |||||||||||||||||  |||||||    
T  52982847 aagcgtacgatcttatgtttcagatcacggtcttgtcgaccatggcttggaggtagtgtctcatcttcatcttccaaccaatatgtctcgagaattctaa 52982946  T
Q  254 cagccttctcataaatttcaatgtggttgtgactccgcaagttttcaatctttcccaatccctcaacatcatctatcatctgagcatacaagttgacatc 353  Q
    |||| ||||||||||||||| ||| ||  |||||| ||||||||||||||||| ||||||||||| |||| |||||||||||||||||||| ||||||||    
T  52982947 cagcattctcataaatttcattgttgtcatgactctgcaagttttcaatcttttccaatccctcagcatcctctatcatctgagcatacaaattgacatc 52983046  T
Q  354 gccggtgttacaaaagtttttctccgcttctccaacctccagaaaattctcaagaccttctaagcagaca 423  Q
     |  |||||||||||  ||||||||||||||||||||| ||||| ||||||||||| |||||| ||||||    
T  52983047 tctcgtgttacaaaaccttttctccgcttctccaaccttcagaatattctcaagacattctaaacagaca 52983116  T

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Target: chr4; HSP #4
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 224 - 423
Target Start/End: Original strand, 55619041 - 55619239
Alignment:
Q  224 cttccaaccaatatgtctcgacgattctaacagccttctcataaatttcaatgtggttgtgactccgcaagttttcaatctttcccaatccctcaacatc 323  Q
    |||||||||||||||||||||  ||| ||||||||||||||||||||||  ||| ||  |||||| |||||||||| || ||||| ||||||||| ||||    
T  55619041 cttccaaccaatatgtctcgagaattttaacagccttctcataaatttctttgttgtcatgactctgcaagttttcgatttttcc-aatccctcagcatc 55619139  T
Q  324 atctatcatctgagcatacaagttgacatcgccggtgttacaaaagtttttctccgcttctccaacctccagaaaattctcaagaccttctaagcagaca 423  Q
    |||||||||||||||||||||||||||||| || |||||||||||| |||||||||||||||||||||  ||||||||||||||||| ||||| ||||||    
T  55619140 atctatcatctgagcatacaagttgacatctcccgtgttacaaaagcttttctccgcttctccaacctttagaaaattctcaagaccatctaaacagaca 55619239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 224 - 423
Target Start/End: Original strand, 55626345 - 55626543
Alignment:
Q  224 cttccaaccaatatgtctcgacgattctaacagccttctcataaatttcaatgtggttgtgactccgcaagttttcaatctttcccaatccctcaacatc 323  Q
    |||||||||||||||||||||  ||| ||||||||||||||||||||||  ||| ||  |||||| |||||||||| || ||||| ||||||||| ||||    
T  55626345 cttccaaccaatatgtctcgagaattttaacagccttctcataaatttctttgttgtcatgactctgcaagttttcgatttttcc-aatccctcagcatc 55626443  T
Q  324 atctatcatctgagcatacaagttgacatcgccggtgttacaaaagtttttctccgcttctccaacctccagaaaattctcaagaccttctaagcagaca 423  Q
    |||||||||||||||||||||||||||||| || |||||||||||| |||||||||||||||||||||  ||||||||||||||||| ||||| ||||||    
T  55626444 atctatcatctgagcatacaagttgacatctcccgtgttacaaaagcttttctccgcttctccaacctttagaaaattctcaagaccatctaaacagaca 55626543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 224 - 415
Target Start/End: Original strand, 54860816 - 54861007
Alignment:
Q  224 cttccaaccaatatgtctcgacgattctaacagccttctcataaatttcaatgtggttgtgactccgcaagttttcaatctttcccaatccctcaacatc 323  Q
    ||||||||||||||||||| |  ||| |||||||||||||||||||||||  || ||  ||| || ||| ||| ||||||||| ||||||||||| ||||    
T  54860816 cttccaaccaatatgtctcaagaattttaacagccttctcataaatttcatagttgtcatgattctgcatgttatcaatcttttccaatccctcagcatc 54860915  T
Q  324 atctatcatctgagcatacaagttgacatcgccggtgttacaaaagtttttctccgcttctccaacctccagaaaattctcaagaccttcta 415  Q
     ||||||||||||||||||||||||||||| || ||||||| |||| |||||||| |||||||||||| ||||| |||||||||||||||||    
T  54860916 ctctatcatctgagcatacaagttgacatctcccgtgttaccaaagcttttctccacttctccaaccttcagaatattctcaagaccttcta 54861007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 224 - 409
Target Start/End: Original strand, 3671087 - 3671272
Alignment:
Q  224 cttccaaccaatatgtctcgacgattctaacagccttctcataaatttcaatgtggttgtgactccgcaagttttcaatctttcccaatccctcaacatc 323  Q
    ||||||||||||||||||| |  ||| | |||||||||||||||||||||  || ||  |||||| |||||||| |||||||| ||||||||||  | ||    
T  3671087 cttccaaccaatatgtctcaagaattttgacagccttctcataaatttcatagttgtcatgactctgcaagtttccaatcttttccaatccctccgcgtc 3671186  T
Q  324 atctatcatctgagcatacaagttgacatcgccggtgttacaaaagtttttctccgcttctccaacctccagaaaattctcaagac 409  Q
      |||||||| ||||||||||||||||||| || |||| ||    ||||||||||||||||||||||| |||||||||||||||||    
T  3671187 ccctatcatcagagcatacaagttgacatctcccgtgtaaccggggtttttctccgcttctccaaccttcagaaaattctcaagac 3671272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 224 - 404
Target Start/End: Complemental strand, 54630502 - 54630322
Alignment:
Q  224 cttccaaccaatatgtctcgacgattctaacagccttctcataaatttcaatgtggttgtgactccgcaagttttcaatctttcccaatccctcaacatc 323  Q
    |||||||||||||| ||||||  ||| || |||||||||||||||||||  |||  |  |||||   |||||||||||||||| ||||||||| ||||||    
T  54630502 cttccaaccaatatctctcgagaattttagcagccttctcataaatttctctgtcttcatgactatccaagttttcaatcttttccaatcccttaacatc 54630403  T
Q  324 atctatcatctgagcatacaagttgacatcgccggtgttacaaaagtttttctccgcttctccaacctccagaaaattctc 404  Q
     |||||||||||||||||||| |||||||| || ||||||| |||  ||||||| ||||||||||||| |||||| |||||    
T  54630402 ctctatcatctgagcatacaaattgacatctcccgtgttaccaaatcttttctctgcttctccaaccttcagaaatttctc 54630322  T

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Target: chr4; HSP #9
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 308 - 415
Target Start/End: Complemental strand, 54630310 - 54630203
Alignment:
Q  308 ccaatccctcaacatcatctatcatctgagcatacaagttgacatcgccggtgttacaaaagtttttctccgcttctccaacctccagaaaattctcaag 407  Q
    |||||||||||||||| | |||| |||||||||||||||||||||| ||||||||||  | | ||||||| |||||||||||||  ||||||||||||||    
T  54630310 ccaatccctcaacatcctttatcgtctgagcatacaagttgacatctccggtgttacttatgcttttctctgcttctccaacctttagaaaattctcaag 54630211  T
Q  408 accttcta 415  Q
    ||||||||    
T  54630210 accttcta 54630203  T

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Target: chr4; HSP #10
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 229 - 415
Target Start/End: Complemental strand, 55637393 - 55637207
Alignment:
Q  229 aaccaatatgtctcgacgattctaacagccttctcataaatttcaatgtggttgtgactccgcaagttttcaatctttcccaatccctcaacatcatcta 328  Q
    ||||||||||| || |  ||| ||||||||||||||  ||||||| ||| ||  |||||| ||||||||||||||| | || | || ||| | |||  ||    
T  55637393 aaccaatatgtttcaagaattttaacagccttctcacgaatttcattgttgtcatgactctgcaagttttcaatctctacccaaccgtcagcgtcaggta 55637294  T
Q  329 tcatctgagcatacaagttgacatcgccggtgttacaaaagtttttctccgcttctccaacctccagaaaattctcaagaccttcta 415  Q
    |||||||| |||||||||||||||| || ||||| | | || |||| || ||||||||||||| |||||||||||||||||||||||    
T  55637293 tcatctgaacatacaagttgacatctcccgtgtttccatagcttttatcggcttctccaaccttcagaaaattctcaagaccttcta 55637207  T

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Target: chr2 (Bit Score: 99; Significance: 1e-48; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 224 - 422
Target Start/End: Complemental strand, 13403805 - 13403607
Alignment:
Q  224 cttccaaccaatatgtctcgacgattctaacagccttctcataaatttcaatgtggttgtgactccgcaagttttcaatctttcccaatccctcaacatc 323  Q
    |||||||||||||||||||||  ||| ||||||||||||| ||||||||| ||| ||  |||||| ||| ||| ||||||||| ||||||||||  | ||    
T  13403805 cttccaaccaatatgtctcgagaattttaacagccttctcgtaaatttcattgttgtcatgactctgcaggttctcaatcttttccaatccctccgcctc 13403706  T
Q  324 atctatcatctgagcatacaagttgacatcgccggtgttacaaaagtttttctccgcttctccaacctccagaaaattctcaagaccttctaagcagac 422  Q
    |||||||||||||||||||||||||||||| || | ||||| |||| ||||||| |||||||||| || ||||| |||||||||||||||||| |||||    
T  13403705 atctatcatctgagcatacaagttgacatctcccgcgttaccaaagcttttctctgcttctccaatcttcagaatattctcaagaccttctaaacagac 13403607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 80; Significance: 2e-37; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 224 - 423
Target Start/End: Complemental strand, 9891696 - 9891497
Alignment:
Q  224 cttccaaccaatatgtctcgacgattctaacagccttctcataaatttcaatgtggttgtgactccgcaagttttcaatctttcccaatccctcaacatc 323  Q
    ||||||||||||||||||| |  ||| | ||||||||| |||||||||||  || ||  |||||| ||||||||||||||||| ||||||||||| | ||    
T  9891696 cttccaaccaatatgtctcaagaattttgacagccttcccataaatttcatagttgtcatgactctgcaagttttcaatcttttccaatccctcagcgtc 9891597  T
Q  324 atctatcatctgagcatacaagttgacatcgccggtgttacaaaagtttttctccgcttctccaacctccagaaaattctcaagaccttctaagcagaca 423  Q
     ||||||||| ||||||||||||||||||| || |||| ||    ||||||| ||||||||||||||| |||||||| |||||||| || ||| ||||||    
T  9891596 ctctatcatcagagcatacaagttgacatctcctgtgtaaccggggtttttccccgcttctccaaccttcagaaaatcctcaagacattgtaaacagaca 9891497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 298 - 397
Target Start/End: Complemental strand, 17220257 - 17220158
Alignment:
Q  298 tcaatctttcccaatccctcaacatcatctatcatctgagcatacaagttgacatcgccggtgttacaaaagtttttctccgcttctccaacctccagaa 397  Q
    ||||||||| ||||||||||| |||| |||||||| |||||||||||||||||||| || ||||||| |||| ||||||||||||||||||||| |||||    
T  17220257 tcaatcttttccaatccctcagcatcttctatcatttgagcatacaagttgacatctcccgtgttaccaaagcttttctccgcttctccaaccttcagaa 17220158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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