View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5336_high_13 (Length: 223)

Name: NF5336_high_13
Description: NF5336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5336_high_13
NF5336_high_13
[»] chr7 (11 HSPs)
chr7 (17-205)||(32727174-32727367)
chr7 (17-189)||(35981617-35981789)
chr7 (17-189)||(36003029-36003201)
chr7 (17-205)||(36217887-36218075)
chr7 (22-185)||(35938939-35939102)
chr7 (16-178)||(36221905-36222067)
chr7 (22-188)||(35946393-35946559)
chr7 (53-189)||(35977087-35977223)
chr7 (53-189)||(35998499-35998635)
chr7 (22-189)||(35957601-35957768)
chr7 (22-138)||(35952032-35952148)
[»] chr1 (2 HSPs)
chr1 (17-189)||(18125316-18125488)
chr1 (26-186)||(18117672-18117832)
[»] chr2 (1 HSPs)
chr2 (21-188)||(26328937-26329104)
[»] chr4 (2 HSPs)
chr4 (80-117)||(7128578-7128615)
chr4 (80-117)||(7721852-7721889)


Alignment Details
Target: chr7 (Bit Score: 162; Significance: 1e-86; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 17 - 205
Target Start/End: Original strand, 32727174 - 32727367
Alignment:
Q  17 aatatccacttatttaaatcatattttgagaataaggaacttcctaatgttctcacagaaagtggaacccctgcacattttttcacaatttctttgccaa 116  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32727174 aatatccacttatttaaatcatattttgagaataaggaacttcgtaatgttctcacagaaagtggaacccctgcacattttttcacaatttctttgccaa 32727273  T
Q  117 tatgcacgagatctggatatttaactacttcaccttccttaaatgcccatttgacaaac-----aaagataaacaatcttctagggaaagacct 205  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     ||||||||||||||| |||| |||||||||    
T  32727274 tatgcacgagatctggatatttaactacttcaccttccttaaatgcccatttgacaaacaaattaaagataaacaatctcctagagaaagacct 32727367  T

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Target: chr7; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 17 - 189
Target Start/End: Original strand, 35981617 - 35981789
Alignment:
Q  17 aatatccacttatttaaatcatattttgagaataaggaacttcctaatgttctcacagaaagtggaacccctgcacattttttcacaatttctttgccaa 116  Q
    |||| ||||||||||||||||   ||||| || | |||||||||||||||| | ||||  |||||||| |||  ||||||||||||||||||||| || |    
T  35981617 aatacccacttatttaaatcaagctttgaaaacagggaacttcctaatgttttgacagctagtggaactcctcgacattttttcacaatttcttttccga 35981716  T
Q  117 tatgcacgagatctggatatttaactacttcaccttccttaaatgcccatttgacaaacaaagataaacaatc 189  Q
    ||| ||| |||| |||||||||   | ||||||||||||||||||||||||||||||||| ||||||||||||    
T  35981717 tatccactagatttggatattttgtttcttcaccttccttaaatgcccatttgacaaacagagataaacaatc 35981789  T

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Target: chr7; HSP #3
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 17 - 189
Target Start/End: Original strand, 36003029 - 36003201
Alignment:
Q  17 aatatccacttatttaaatcatattttgagaataaggaacttcctaatgttctcacagaaagtggaacccctgcacattttttcacaatttctttgccaa 116  Q
    |||| ||||||||||||||||   ||||| || | |||||||||||||||| | ||||  |||||||| |||  ||||||||||||||||||||| || |    
T  36003029 aatacccacttatttaaatcaagctttgaaaacagggaacttcctaatgttttgacagctagtggaactcctcgacattttttcacaatttcttttccga 36003128  T
Q  117 tatgcacgagatctggatatttaactacttcaccttccttaaatgcccatttgacaaacaaagataaacaatc 189  Q
    ||| ||| |||| |||||||||   | ||||||||||||||||||||||||||||||||| ||||||||||||    
T  36003129 tatccactagatttggatattttgtttcttcaccttccttaaatgcccatttgacaaacagagataaacaatc 36003201  T

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Target: chr7; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 17 - 205
Target Start/End: Complemental strand, 36218075 - 36217887
Alignment:
Q  17 aatatccacttatttaaatcatattttgagaataaggaacttcctaatgttctcacagaaagtggaacccctgcacattttttcacaatttctttgccaa 116  Q
    |||| |||||||| ||||||| |||||||||| |  ||||||||||  ||||||||||  || ||||| || ||||||||||||||||||||||| ||||    
T  36218075 aataaccacttatctaaatcaaattttgagaacagagaacttcctaccgttctcacagccagcggaactccagcacattttttcacaatttcttttccaa 36217976  T
Q  117 tatgcacgagatctggatatttaactacttcaccttccttaaatgcccatttgacaaacaaagataaacaatcttctagggaaagacct 205  Q
    | | ||| |||| |||||||||  || |||| || ||||| ||||||||||| ||||||| ||| |||||||| ||||  |||||||||    
T  36217975 tctccactagatttggatatttttcttcttctccatccttgaatgcccatttcacaaacagagacaaacaatcctctaacgaaagacct 36217887  T

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Target: chr7; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 22 - 185
Target Start/End: Original strand, 35938939 - 35939102
Alignment:
Q  22 ccacttatttaaatcatattttgagaataaggaacttcctaatgttctcacagaaagtggaacccctgcacattttttcacaatttctttgccaatatgc 121  Q
    |||||||||||||||| ||||||| || |  ||||||||||||||| ||||||  |||||||| |||  |||||||||||||||||| ||  |||| | |    
T  35938939 ccacttatttaaatcaaattttgaaaacagagaacttcctaatgttttcacagccagtggaactccttgacattttttcacaatttcctttgcaatcttc 35939038  T
Q  122 acgagatctggatatttaactacttcaccttccttaaatgcccatttgacaaacaaagataaac 185  Q
    || |||| |||||||||  || |||||||||||||||||||  |||||||||||| ||||||||    
T  35939039 acaagatttggatatttttcttcttcaccttccttaaatgctgatttgacaaacagagataaac 35939102  T

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Target: chr7; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 16 - 178
Target Start/End: Complemental strand, 36222067 - 36221905
Alignment:
Q  16 gaatatccacttatttaaatcatattttgagaataaggaacttcctaatgttctcacagaaagtggaacccctgcacattttttcacaatttctttgcca 115  Q
    |||||||||||||||||||||| ||||||| || |  ||||||||||||||| | ||||  || ||||| || ||||||||||||||||||||||| |||    
T  36222067 gaatatccacttatttaaatcaaattttgataacagagaacttcctaatgttttgacagccagcggaactccagcacattttttcacaatttcttttcca 36221968  T
Q  116 atatgcacgagatctggatatttaactacttcaccttccttaaatgcccatttgacaaacaaa 178  Q
    || | ||| |||| || ||||||  || |||| || || |||||||||||||| |||||||||    
T  36221967 atctccactagatttgaatatttttcttcttctccgtctttaaatgcccatttcacaaacaaa 36221905  T

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Target: chr7; HSP #7
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 22 - 188
Target Start/End: Original strand, 35946393 - 35946559
Alignment:
Q  22 ccacttatttaaatcatattttgagaataaggaacttcctaatgttctcacagaaagtggaacccctgcacattttttcacaatttctttgccaatatgc 121  Q
    ||||||| ||| |||| | |||||||| |  |||||| ||||||||||||| |  ||||||||||||   |||||||||||||||||||| || ||        
T  35946393 ccacttacttatatcaaagtttgagaagagagaacttgctaatgttctcacggctagtggaaccccttggcattttttcacaatttcttttcctatcgct 35946492  T
Q  122 acgagatctggatatttaactacttcaccttccttaaatgcccatttgacaaacaaagataaacaat 188  Q
    || |||| |||||| ||   | ||||||||||||| ||||||||||||||||||| ||| |||||||    
T  35946493 actagatttggatactttttttcttcaccttccttgaatgcccatttgacaaacagagacaaacaat 35946559  T

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Target: chr7; HSP #8
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 53 - 189
Target Start/End: Original strand, 35977087 - 35977223
Alignment:
Q  53 gaacttcctaatgttctcacagaaagtggaacccctgcacattttttcacaatttctttgccaatatgcacgagatctggatatttaactacttcacctt 152  Q
    ||||||||||||||||||||||  || |||||||||   || ||||| ||||||||||| || || |  || |||| |||||||||   | |||| ||||    
T  35977087 gaacttcctaatgttctcacagctagcggaaccccttggcacttttttacaatttcttttccgatctctactagatttggatattttttttcttcgcctt 35977186  T
Q  153 ccttaaatgcccatttgacaaacaaagataaacaatc 189  Q
    |||| || |||||||||||||||| ||||||||||||    
T  35977187 ccttgaacgcccatttgacaaacagagataaacaatc 35977223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 53 - 189
Target Start/End: Original strand, 35998499 - 35998635
Alignment:
Q  53 gaacttcctaatgttctcacagaaagtggaacccctgcacattttttcacaatttctttgccaatatgcacgagatctggatatttaactacttcacctt 152  Q
    ||||||||||||||||||||||  || |||||||||   || ||||| ||||||||||| || || |  || |||| |||||||||   | |||| ||||    
T  35998499 gaacttcctaatgttctcacagctagcggaaccccttggcacttttttacaatttcttttccgatctctactagatttggatattttttttcttcgcctt 35998598  T
Q  153 ccttaaatgcccatttgacaaacaaagataaacaatc 189  Q
    |||| || |||||||||||||||| ||||||||||||    
T  35998599 ccttgaacgcccatttgacaaacagagataaacaatc 35998635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 22 - 189
Target Start/End: Original strand, 35957601 - 35957768
Alignment:
Q  22 ccacttatttaaatcatattttgagaataaggaacttcctaatgttctcacagaaagtggaacccctgcacattttttcacaatttctttgccaatatgc 121  Q
    ||||||| ||| |||| | |||||||| |  |||||| |||| |||||||| |  ||||||||||||   |||||||||||||||||||| ||||| |      
T  35957601 ccacttacttatatcaaagtttgagaagagagaacttgctaaagttctcacggctagtggaaccccttggcattttttcacaatttcttttccaatctct 35957700  T
Q  122 acgagatctggatatttaactacttcaccttccttaaatgcccatttgacaaacaaagataaacaatc 189  Q
    ||  ||| |||||| ||   | |||| |||||||| ||||||||||||||||||| ||||| ||||||    
T  35957701 acttgatttggataatttttttcttcgccttccttgaatgcccatttgacaaacagagatatacaatc 35957768  T

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Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 138
Target Start/End: Original strand, 35952032 - 35952148
Alignment:
Q  22 ccacttatttaaatcatattttgagaataaggaacttcctaatgttctcacagaaagtggaacccctgcacattttttcacaatttctttgccaatatgc 121  Q
    ||||||| |||||||  | |||||||| | ||||||||| |||| | ||||||  ||||||||||||  ||||||||||||| | ||||| ||||| |      
T  35952032 ccacttacttaaatcgaagtttgagaagagggaacttcccaatgatttcacagccagtggaaccccttgacattttttcacagtatcttttccaatctct 35952131  T
Q  122 acgagatctggatattt 138  Q
    || |||| |||||||||    
T  35952132 actagatttggatattt 35952148  T

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Target: chr1 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 17 - 189
Target Start/End: Original strand, 18125316 - 18125488
Alignment:
Q  17 aatatccacttatttaaatcatattttgagaataaggaacttcctaatgttctcacagaaagtggaacccctgcacattttttcacaatttctttgccaa 116  Q
    ||||||||  ||||||||||| |||||||||||| |||||||||||||||||| ||||  ||||||||||||   |||||||||||||| ||||| || |    
T  18125316 aatatccatgtatttaaatcaaattttgagaatagggaacttcctaatgttctaacagctagtggaaccccttggcattttttcacaatctcttttccta 18125415  T
Q  117 tatgcacgagatctggatatttaactacttcaccttccttaaatgcccatttgacaaacaaagataaacaatc 189  Q
    | |  || |||| |||||||||  || |||| |||||||| ||||||||||||||||| | ||||||||||||    
T  18125416 tctctactagatttggatatttttcttcttcgccttccttgaatgcccatttgacaaatagagataaacaatc 18125488  T

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Target: chr1; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 26 - 186
Target Start/End: Original strand, 18117672 - 18117832
Alignment:
Q  26 ttatttaaatcatattttgagaataaggaacttcctaatgttctcacagaaagtggaacccctgcacattttttcacaatttctttgccaatatgcacga 125  Q
    |||||||||||| ||||||| || |   | |||||||||||||||||    ||||||||||| || ||||| |||||||||||||| || || |  || |    
T  18117672 ttatttaaatcaaattttgaaaacagacagcttcctaatgttctcacgacgagtggaacccccgcgcatttcttcacaatttcttttcctatctcaacta 18117771  T
Q  126 gatctggatatttaactacttcaccttccttaaatgcccatttgacaaacaaagataaaca 186  Q
    ||| |||||||||  || |||| |||||||| ||||||||||| |||||||||||||||||    
T  18117772 gatttggatatttgtcttcttcgccttccttgaatgcccatttcacaaacaaagataaaca 18117832  T

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Target: chr2 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 21 - 188
Target Start/End: Complemental strand, 26329104 - 26328937
Alignment:
Q  21 tccacttatttaaatcatattttgagaataaggaacttcctaatgttctcacagaaagtggaacccctgcacattttttcacaatttctttgccaatatg 120  Q
    ||||||||| ||||||| |||||||||| |  ||||||||||| ||| |||| |  | ||||| ||||   ||||||||| | || ||||| ||||| |     
T  26329104 tccacttatctaaatcaaattttgagaagagtgaacttcctaacgttttcactgctaatggaatccctcggcattttttcgctatatcttttccaatctc 26329005  T
Q  121 cacgagatctggatatttaactacttcaccttccttaaatgcccatttgacaaacaaagataaacaat 188  Q
    |   |||| |||||| || ||| |||| |||||||||||||||||||||||||| | ||| |||||||    
T  26329004 cgatagatgtggatactttacttcttctccttccttaaatgcccatttgacaaagagagacaaacaat 26328937  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 80 - 117
Target Start/End: Original strand, 7128578 - 7128615
Alignment:
Q  80 ggaacccctgcacattttttcacaatttctttgccaat 117  Q
    |||||||||| |||||||||||||||||| ||||||||    
T  7128578 ggaacccctgaacattttttcacaatttccttgccaat 7128615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 80 - 117
Target Start/End: Original strand, 7721852 - 7721889
Alignment:
Q  80 ggaacccctgcacattttttcacaatttctttgccaat 117  Q
    |||||||||| |||||||||||||||||| ||||||||    
T  7721852 ggaacccctgaacattttttcacaatttccttgccaat 7721889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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