View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5336_high_8 (Length: 266)
Name: NF5336_high_8
Description: NF5336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5336_high_8 |
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Alignment Details
Target: chr3 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 30781505 - 30781259
Alignment:
| Q |
1 |
attacagttaagaccctaactaatgactaattgtcatataactgaataaccgtttcaattagtgcaaggcactggtgctcttcataacatactttgatat |
100 |
Q |
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| T |
30781505 |
attacagttaagaccctaactaatgactaattgtcatataactgaataaccgtttcaattagtgcaaggcactggtgctcttcataacatactttgatat |
30781406 |
T |
|
| Q |
101 |
cccctctcagagtcaaggtggttgcagaaaggtaaacacattgagtttggtgcgaagctctttaaatcgagttgatggtggtgacgtgtgaatgaattcg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30781405 |
cccctctcagagtcaaggtggttgcagaaaggtaaacacattgagtttggtgcgaagctctttaaatcgagttgatggtggtgacgtgtgaatgaattcg |
30781306 |
T |
|
| Q |
201 |
gatgttggtcaacgacatacacatgaaggacaactacagatttagac |
247 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30781305 |
gatgttggtcaacgacatacacatgaaggacaactacagatttagac |
30781259 |
T |
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