View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5336_low_10 (Length: 259)
Name: NF5336_low_10
Description: NF5336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5336_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 53781673 - 53781914
Alignment:
| Q |
1 |
agagtgacatgctggttatttattgaattcaatagtagtctcaccagccaagagtggtgaaggccaaaggaagaacaagtgcttgaaatccaattccaga |
100 |
Q |
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| T |
53781673 |
agagtgacatgctggttatttattgaattcaatagtagtctcaccagccaagagtggtgaaggccaaaggaagaacaagtgcttgaaatccaattccaga |
53781772 |
T |
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| Q |
101 |
acaaagcaaatgaaaagcagcatagtaagcgtttccttttctacaagcagtgattggaagccaatcatcttgttggtcaaacttggtgaagtgaccaact |
200 |
Q |
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| T |
53781773 |
acaaagcaaatgaaaagcagcatagtaagcgtttccttttctacaagcagtgattggaagccaatcatcttgttggtcaaacttggtgaagtgaccaact |
53781872 |
T |
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| Q |
201 |
tcttcaagaatgttttcaatgactttcttcaatggagtagct |
242 |
Q |
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| T |
53781873 |
tcttcaagaatgttttcaatgactttcttcaatggagtagct |
53781914 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 43 - 124
Target Start/End: Original strand, 9244052 - 9244133
Alignment:
| Q |
43 |
accagccaagagtggtgaaggccaaaggaagaacaagtgcttgaaatccaattccagaacaaagcaaatgaaaagcagcata |
124 |
Q |
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| T |
9244052 |
accaaccaagaatagtgaaagcaacaggaagaacaagagcttgaataccaatcccagaacaaagagtatgaaaagcagcata |
9244133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 43 - 124
Target Start/End: Original strand, 9257719 - 9257800
Alignment:
| Q |
43 |
accagccaagagtggtgaaggccaaaggaagaacaagtgcttgaaatccaattccagaacaaagcaaatgaaaagcagcata |
124 |
Q |
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| T |
9257719 |
accaaccaagaatagtgaaggcaacaggaagaacaagagcctgaataccaatcccagaacaaagagtatgaaaagcagcata |
9257800 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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