View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5336_low_11 (Length: 246)

Name: NF5336_low_11
Description: NF5336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5336_low_11
NF5336_low_11
[»] scaffold0341 (2 HSPs)
scaffold0341 (9-246)||(1005-1242)
scaffold0341 (9-246)||(8658-8896)
[»] chr1 (12 HSPs)
chr1 (9-246)||(6506980-6507217)
chr1 (7-239)||(6512888-6513120)
chr1 (7-246)||(6521516-6521755)
chr1 (7-246)||(6517280-6517519)
chr1 (13-175)||(47713336-47713498)
chr1 (13-173)||(47745921-47746081)
chr1 (13-173)||(47760253-47760413)
chr1 (13-170)||(47718135-47718292)
chr1 (10-106)||(6500291-6500387)
chr1 (10-106)||(47777837-47777933)
chr1 (9-164)||(6523520-6523675)
chr1 (18-56)||(47604395-47604433)
[»] chr7 (2 HSPs)
chr7 (130-246)||(722161-722276)
chr7 (103-150)||(704378-704425)
[»] chr5 (2 HSPs)
chr5 (13-117)||(27371777-27371881)
chr5 (12-164)||(28831400-28831552)


Alignment Details
Target: scaffold0341 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: scaffold0341
Description:

Target: scaffold0341; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 9 - 246
Target Start/End: Complemental strand, 1242 - 1005
Alignment:
Q  9 tggtaactacacaaccaacagcacctaccacacaaacctcaaaacccttctatccactctcacttccaacaaagatattaactacggtttctataattcc 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1242 tggtaactacacaaccaacagcacctaccacacaaacctcaaaacccttctatccactctcacttccaacaaagatattaactacggtttctataattcc 1143  T
Q  109 tcttatggcataaacaccgacaaagtaaacgctattggactgtgtagaggagatgtcaaacccgatgattgtcaaaattgcctccaaaattcaactgccc 208  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1142 tcttatggcgtaaacaccgacaaagtaaacgctattggactgtgtagaggagatgtcaaacccgatgattgtcaaaattgcctccaaaattcaactgccc 1043  T
Q  209 ttctaacacaactttgtcaaaatcgaaaagaagcaatt 246  Q
    ||||||||||||||||||||||||||||||||||||||    
T  1042 ttctaacacaactttgtcaaaatcgaaaagaagcaatt 1005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0341; HSP #2
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 9 - 246
Target Start/End: Complemental strand, 8896 - 8658
Alignment:
Q  9 tggtaactacacaaccaacagcacctaccacacaaacctcaaaacccttctatccactctcacttccaacaaagatattaactacggtttctataattcc 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8896 tggtaactacacaaccaacagcacctaccacacaaacctcaaaacccttctatccactctcacttccaacaaagatattaactacggtttctataattcc 8797  T
Q  109 tcttatggcataaacaccgacaaagtaaacgctattggactgtgtagaggagatgtcaaacccgatgattgtcaaaattgcctccaaaattcaactgccc 208  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8796 tcttatggcgtaaacaccgacaaagtaaacgctattggactgtgtagaggagatgtcaaacccgatgattgtcaaaattgcctccaaaattcaactgccc 8697  T
Q  209 ttctaacacaactttgtcaaaat-cgaaaagaagcaatt 246  Q
    ||||||||||||||||||||||| |||||||||||||||    
T  8696 ttctaacacaactttgtcaaaatacgaaaagaagcaatt 8658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 234; Significance: 1e-129; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 9 - 246
Target Start/End: Complemental strand, 6507217 - 6506980
Alignment:
Q  9 tggtaactacacaaccaacagcacctaccacacaaacctcaaaacccttctatccactctcacttccaacaaagatattaactacggtttctataattcc 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6507217 tggtaactacacaaccaacagcacctaccacacaaacctcaaaacccttctatccactctcacttccaacaaagatattaactacggtttctataattcc 6507118  T
Q  109 tcttatggcataaacaccgacaaagtaaacgctattggactgtgtagaggagatgtcaaacccgatgattgtcaaaattgcctccaaaattcaactgccc 208  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6507117 tcttatggcgtaaacaccgacaaagtaaacgctattggactgtgtagaggagatgtcaaacccgatgattgtcaaaattgcctccaaaattcaactgccc 6507018  T
Q  209 ttctaacacaactttgtcaaaatcgaaaagaagcaatt 246  Q
    ||||||||||||||||||||||||||||||||||||||    
T  6507017 ttctaacacaactttgtcaaaatcgaaaagaagcaatt 6506980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 7 - 239
Target Start/End: Complemental strand, 6513120 - 6512888
Alignment:
Q  7 ggtggtaactacacaaccaacagcacctaccacacaaacctcaaaacccttctatccactctcacttccaacaaagatattaactacggtttctataatt 106  Q
    ||||||||||||||||||||||||||||| |||| |||||| || ||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  6513120 ggtggtaactacacaaccaacagcacctatcacaaaaaccttaacacccttctatccactctcacttccaacaaagatatcaactacggtttctataatt 6513021  T
Q  107 cctcttatggcataaacaccgacaaagtaaacgctattggactgtgtagaggagatgtcaaacccgatgattgtcaaaattgcctccaaaattcaactgc 206  Q
    |||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| |  | |||||| |||     
T  6513020 cctcttatggaataaacaccgacaaagtaaacgctattggactttgtagaggagatgtcaaacccaatgattgtcaaaattgcataaagaattcatctgt 6512921  T
Q  207 ccttctaacacaactttgtcaaaatcgaaaaga 239  Q
    | |||||||||||||||||||||||||||||||    
T  6512920 ctttctaacacaactttgtcaaaatcgaaaaga 6512888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 7 - 246
Target Start/End: Original strand, 6521516 - 6521755
Alignment:
Q  7 ggtggtaactacacaaccaacagcacctaccacacaaacctcaaaacccttctatccactctcacttccaacaaagatattaactacggtttctataatt 106  Q
    |||||||||||| |||| ||||||||||||||||||||||| || |||||| |||||||||||||||||||||||||||| |||||||||||||||||||    
T  6521516 ggtggtaactacccaacaaacagcacctaccacacaaaccttaacacccttttatccactctcacttccaacaaagatatcaactacggtttctataatt 6521615  T
Q  107 cctcttatggcataaacaccgacaaagtaaacgctattggactgtgtagaggagatgtcaaacccgatgattgtcaaaattgcctccaaaattcaactgc 206  Q
    |||||||||| |  ||||| |||||||||||||| |||||||| ||||||||||||||||||| | |||||||||||||||||||| ||||||||||||     
T  6521616 cctcttatggaaacaacactgacaaagtaaacgcgattggactatgtagaggagatgtcaaactcaatgattgtcaaaattgcctcaaaaattcaactgt 6521715  T
Q  207 ccttctaacacaactttgtcaaaatcgaaaagaagcaatt 246  Q
     ||||||||||||| ||||||||| |||||||||||||||    
T  6521716 tcttctaacacaacattgtcaaaaccgaaaagaagcaatt 6521755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 7 - 246
Target Start/End: Complemental strand, 6517519 - 6517280
Alignment:
Q  7 ggtggtaactacacaaccaacagcacctaccacacaaacctcaaaacccttctatccactctcacttccaacaaagatattaactacggtttctataatt 106  Q
    ||||||| ||||||||||||||||||||||||||||||||| || |||||| |||||| |||||||||||||||||| || ||||||||||||||||| |    
T  6517519 ggtggtatctacacaaccaacagcacctaccacacaaaccttaacacccttttatccattctcacttccaacaaagaaatcaactacggtttctataact 6517420  T
Q  107 cctcttatggcataaacaccgacaaagtaaacgctattggactgtgtagaggagatgtcaaacccgatgattgtcaaaattgcctccaaaattcaactgc 206  Q
    |||||||||||||||||| ||||||||||||||| |||||||| || ||||||||| | |||||  ||||||||| |||||| ||||||||||||||||     
T  6517419 cctcttatggcataaacagcgacaaagtaaacgcaattggactatgcagaggagatttaaaaccgaatgattgtcgaaattgtctccaaaattcaactgt 6517320  T
Q  207 ccttctaacacaactttgtcaaaatcgaaaagaagcaatt 246  Q
      |||||||||||| |||||||||| ||||| ||||||||    
T  6517319 gtttctaacacaacgttgtcaaaatagaaaacaagcaatt 6517280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 13 - 175
Target Start/End: Complemental strand, 47713498 - 47713336
Alignment:
Q  13 aactacacaaccaacagcacctaccacacaaacctcaaaacccttctatccactctcacttccaacaaagatattaactacggtttctataattcctctt 112  Q
    ||||||||| |||| |||||||| || |  |||||||| |||||| |||||| ||||||||||||||   | || |||||||||||||| |||| |||||    
T  47713498 aactacacagccaatagcacctatcaaaacaacctcaacacccttttatccaatctcacttccaacactcaaatcaactacggtttctacaatttctctt 47713399  T
Q  113 atggcataaacaccgacaaagtaaacgctattggactgtgtagaggagatgtcaaacccgatg 175  Q
    |||||  ||||||||||||||||||||| |||||||| || ||||||||||| ||||| ||||    
T  47713398 atggccaaaacaccgacaaagtaaacgccattggactctgcagaggagatgttaaacctgatg 47713336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 13 - 173
Target Start/End: Complemental strand, 47746081 - 47745921
Alignment:
Q  13 aactacacaaccaacagcacctaccacacaaacctcaaaacccttctatccactctcacttccaacaaagatattaactacggtttctataattcctctt 112  Q
    ||||||||| |||| |||||||| || |  |||||||| |||||| |||||| ||||||||||||||   | || |||||||||||||| |||| |||||    
T  47746081 aactacacagccaatagcacctatcaaaacaacctcaacacccttttatccaatctcacttccaacactcaaatcaactacggtttctacaatttctctt 47745982  T
Q  113 atggcataaacaccgacaaagtaaacgctattggactgtgtagaggagatgtcaaacccga 173  Q
    |||||  |||||| || ||||||||||| |||||||| || ||||||||||| ||||||||    
T  47745981 atggccaaaacactgataaagtaaacgccattggactctgcagaggagatgttaaacccga 47745921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 13 - 173
Target Start/End: Complemental strand, 47760413 - 47760253
Alignment:
Q  13 aactacacaaccaacagcacctaccacacaaacctcaaaacccttctatccactctcacttccaacaaagatattaactacggtttctataattcctctt 112  Q
    ||||||||| |||| |||||||| || |  |||||||| ||| || | |||| ||| |||||||||  ||| || |||||||||||||| |||   ||||    
T  47760413 aactacacagccaatagcacctatcaaaacaacctcaacaccgttttgtccaatctaacttccaacgcagaaatcaactacggtttctacaatatttctt 47760314  T
Q  113 atggcataaacaccgacaaagtaaacgctattggactgtgtagaggagatgtcaaacccga 173  Q
    |||||  |||||| |||||||||||||| |||||||| |||||||||||||| ||||||||    
T  47760313 atggccaaaacactgacaaagtaaacgccattggactctgtagaggagatgttaaacccga 47760253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 13 - 170
Target Start/End: Complemental strand, 47718292 - 47718135
Alignment:
Q  13 aactacacaaccaacagcacctaccacacaaacctcaaaacccttctatccactctcacttccaacaaagatattaactacggtttctataattcctctt 112  Q
    ||||||||| |||| |||||||| || |  |||||||  |||||| | |||| ||| |||||||||| ||| || |||||||||||||| |||| |||||    
T  47718292 aactacacagccaatagcacctatcaaaacaacctcagcacccttttgtccaatctaacttccaacacagaaatcaactacggtttctacaatttctctt 47718193  T
Q  113 atggcataaacaccgacaaagtaaacgctattggactgtgtagaggagatgtcaaacc 170  Q
    |||||  |||||| ||||||||||||||  |||| || || ||||||||||| |||||    
T  47718192 atggccaaaacactgacaaagtaaacgccgttggcctctgcagaggagatgttaaacc 47718135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 10 - 106
Target Start/End: Complemental strand, 6500387 - 6500291
Alignment:
Q  10 ggtaactacacaaccaacagcacctaccacacaaacctcaaaacccttctatccactctcacttccaacaaagatattaactacggtttctataatt 106  Q
    |||||||||||||| || ||||||||  ||| ||||||||| || ||| |||| |||||||||||||||| ||| || |||||||||||||| ||||    
T  6500387 ggtaactacacaacaaatagcacctatgacaaaaacctcaacacacttttatcaactctcacttccaacacagaaatcaactacggtttctacaatt 6500291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 10 - 106
Target Start/End: Original strand, 47777837 - 47777933
Alignment:
Q  10 ggtaactacacaaccaacagcacctaccacacaaacctcaaaacccttctatccactctcacttccaacaaagatattaactacggtttctataatt 106  Q
    |||||||||||||| |||||||||||| | ||||||||||| || ||| |||||||||||| |||||||| | | || || ||||||||||| ||||    
T  47777837 ggtaactacacaacaaacagcacctacgaaacaaacctcaacacacttttatccactctcatttccaacacacaaatcaattacggtttctacaatt 47777933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 9 - 164
Target Start/End: Original strand, 6523520 - 6523675
Alignment:
Q  9 tggtaactacacaaccaacagcacctaccacacaaacctcaaaacccttctatccactctcacttccaacaaagatattaactacggtttctataattcc 108  Q
    ||||| ||||||| ||||||| | |||||| |||||||| ||| | ||||| |||||||||||||||||||   | || |||||||||||||| |||| |    
T  6523520 tggtacctacacagccaacagtatctaccaaacaaaccttaaatcacttctgtccactctcacttccaacacgcaaatcaactacggtttctacaatttc 6523619  T
Q  109 tcttatggcataaacaccgacaaagtaaacgctattggactgtgtagaggagatgt 164  Q
    ||  | ||   ||||||  ||||||||||||| ||||| || || ||||| |||||    
T  6523620 tcaaacggtgaaaacacaaacaaagtaaacgcaattggtctttgcagaggcgatgt 6523675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 56
Target Start/End: Original strand, 47604395 - 47604433
Alignment:
Q  18 cacaaccaacagcacctaccacacaaacctcaaaaccct 56  Q
    |||| |||||||||||||||| |||||||||||||||||    
T  47604395 cacatccaacagcacctaccaaacaaacctcaaaaccct 47604433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 130 - 246
Target Start/End: Original strand, 722161 - 722276
Alignment:
Q  130 aaagtaaacgctattggactgtgtagaggagatgtcaaacccgatgattgtcaaaattgcctccaaaattcaactgcccttctaacacaactttgtcaaa 229  Q
    ||||||||||   ||||||| |||||||||||||| || | | |||||||||||| ||||| | || |||||| || |||||||||||||| ||   |||    
T  722161 aaagtaaacgtggttggactatgtagaggagatgttaagctcaatgattgtcaaa-ttgccacaaatattcaattgtccttctaacacaacatttataaa 722259  T
Q  230 atcgaaaagaagcaatt 246  Q
    | |||||||||||||||    
T  722260 accgaaaagaagcaatt 722276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 103 - 150
Target Start/End: Original strand, 704378 - 704425
Alignment:
Q  103 aattcctcttatggcataaacaccgacaaagtaaacgctattggactg 150  Q
    ||||| ||||||| ||||||||| ||||||||||||||||||||||||    
T  704378 aattcatcttatgacataaacactgacaaagtaaacgctattggactg 704425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 117
Target Start/End: Complemental strand, 27371881 - 27371777
Alignment:
Q  13 aactacacaaccaacagcacctaccacacaaacctcaaaacccttctatccactctcacttccaacaaagatattaactacggtttctataattcctctt 112  Q
    |||||||||  ||| ||||||||| |||  ||||| ||||||||||||| || | || ||||| ||| ||| |||||||||||||| || |||| ||| |    
T  27371881 aactacacagtcaatagcacctacgacaacaaccttaaaacccttctatacagtttctcttcccacacagaaattaactacggtttttacaatttctcat 27371782  T
Q  113 atggc 117  Q
    |||||    
T  27371781 atggc 27371777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 164
Target Start/End: Complemental strand, 28831552 - 28831400
Alignment:
Q  12 taactacacaaccaacagcacctaccacacaaacctcaaaacccttctatccactctcacttccaacaaagatattaactacggtttctataattcctct 111  Q
    |||||||||||  |||||||| || ||   ||||||||| || ||| |||| ||||| |||||||||| ||| || | |||||||||||| || | |||     
T  28831552 taactacacaaaaaacagcacatatcaacaaaacctcaacacacttttatcaactctaacttccaacacagaaatcacctacggtttctacaacttctca 28831453  T
Q  112 tatggcataaacaccgacaaagtaaacgctattggactgtgtagaggagatgt 164  Q
    || |||| |  || | |||||||| |||| || ||| | ||||||||||||||    
T  28831452 tacggcaaaggcaacaacaaagtatacgccataggattatgtagaggagatgt 28831400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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