View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5336_low_13 (Length: 241)
Name: NF5336_low_13
Description: NF5336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5336_low_13 |
 | |
|
| [»] chr4 (4 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 18 - 241
Target Start/End: Original strand, 6127455 - 6127678
Alignment:
| Q |
18 |
ttaaagttgaaattgatcccaagcttaaataaaggaacttctttctcatggattattcttctcacagtgtgactttaatgtttaaattgatctcacaatg |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| ||||||||||||||||||||||| |
|
|
| T |
6127455 |
ttaaagttgaaattgatcccaagcttaaataaaggaacttctttctcatggattatttttctcacagtgtaactttgatgtttaaattgatctcacaatg |
6127554 |
T |
|
| Q |
118 |
caactttgatgtcactttgtaagcataaattgatctcatcaggggaagaaagttaccaatgctttggaaggaactggtagttcagaaagtttatttaaag |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
6127555 |
caactttgatgtcactttgtaagcataaattgatctcattaggggaagaaagttaccaatgctttggaaggaactggtggttcagaaagtttatttaaag |
6127654 |
T |
|
| Q |
218 |
ttgatgtgtgttagatataatata |
241 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
6127655 |
ttgatgtgtgttagatataatata |
6127678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 18 - 213
Target Start/End: Original strand, 44398614 - 44398809
Alignment:
| Q |
18 |
ttaaagttgaaattgatcccaagcttaaataaaggaacttctttctcatggattattcttctcacagtgtgactttaatgtttaaattgatctcacaatg |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| ||| ||||| ||||||||||||||||||||||| |
|
|
| T |
44398614 |
ttaaagttgaaattgatcccaagcttaaatagaggaacttctttctcatcgattattcttctcacaatgtaactttgatgtttaaattgatctcacaatg |
44398713 |
T |
|
| Q |
118 |
caactttgatgtcactttgtaagcataaattgatctcatcaggggaagaaagttaccaatgctttggaaggaactggtagttcagaaagtttattt |
213 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| |
|
|
| T |
44398714 |
caactttgatgtaactttgtaagcataaattgatctcattaggggaagaaagttaccaatgctttggaaggaactggtggtttagaaagtttattt |
44398809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 18 - 213
Target Start/End: Original strand, 43811213 - 43811397
Alignment:
| Q |
18 |
ttaaagttgaaattgatcccaagcttaaataaaggaacttctttctcatggattattcttctcacagtgtgactttaatgtttaaattgatctcacaatg |
117 |
Q |
| |
|
|||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |
|
|
| T |
43811213 |
ttaaagttgaaattgatcccaaacttaaatagaggaacttctttctcatggattattcttctcacagtgtaactttgatgtttaaattgatctcacaatg |
43811312 |
T |
|
| Q |
118 |
caactttgatgtcactttgtaagcataaattgatctcatcaggggaagaaagttaccaatgctttggaaggaactggtagttcagaaagtttattt |
213 |
Q |
| |
|
|| ||||||||| |||||||||||||||| ||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
43811313 |
ca-----------actttgtaaccataaattgatctcattaggggaagaaaattaccaatgctttggaaggaactggtggttcagaaagtttattt |
43811397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 213 - 241
Target Start/End: Original strand, 44398866 - 44398894
Alignment:
| Q |
213 |
taaagttgatgtgtgttagatataatata |
241 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
44398866 |
taaagttgatgtgtgttagatataatata |
44398894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 97; Significance: 8e-48; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 18 - 213
Target Start/End: Original strand, 14659393 - 14659570
Alignment:
| Q |
18 |
ttaaagttgaaattgatcccaagcttaaataaaggaacttctttctcatggattattcttctcacagtgtgactttaatgtttaaattgatctcacaatg |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |
|
|
| T |
14659393 |
ttaaagttgaaattgatcccaagcttaaatagaggaatttctttctcatggattattcttctcacagtgtaactttgatgtttaaattgatctcacaatg |
14659492 |
T |
|
| Q |
118 |
caactttgatgtcactttgtaagcataaattgatctcatcaggggaagaaagttaccaatgctttggaaggaactggtagttcagaaagtttattt |
213 |
Q |
| |
|
||||||||||| |||||||||| | |||||||||||||||||| ||| ||||||||||||| ||||| ||||||||||| |
|
|
| T |
14659493 |
caactttgatg------------------ttgatctcattaagggaagaaagttaccaatacttaggaaggaactggtggttcaaaaagtttattt |
14659570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University