View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5336_low_16 (Length: 219)
Name: NF5336_low_16
Description: NF5336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5336_low_16 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 5 - 219
Target Start/End: Original strand, 25010979 - 25011193
Alignment:
| Q |
5 |
ccagggggttttccctgctgatccgacaagcgccaatactcacatctttccaacgcctacaaaggagccaaattcaaatgaaatatcatctagtcagttg |
104 |
Q |
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| T |
25010979 |
ccagggggttttccctgctgatccgacaagcgccaatactcacatctttccaacgcctacaaaggagccaaattcaaatgaaatgtcatctagtcagttg |
25011078 |
T |
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| Q |
105 |
cagaataaacagacttgtctagtaaaaagcaaaaatggtaacagcgtaaacttctgtctgctcatttttaagtatccttagagaggtgcggtgagtttca |
204 |
Q |
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| T |
25011079 |
caaaataaacagacttgtctagtaaaaagcaaaaatggtaacagcgtaaacttctgtctgctcatttttaagtatccttagagaggtgcggtgagtttca |
25011178 |
T |
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| Q |
205 |
gtttaaaaacaaatt |
219 |
Q |
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||||||||||||||| |
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| T |
25011179 |
gtttaaaaacaaatt |
25011193 |
T |
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