View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5336_low_2 (Length: 410)
Name: NF5336_low_2
Description: NF5336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5336_low_2 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 31 - 396
Target Start/End: Original strand, 10351877 - 10352250
Alignment:
| Q |
31 |
ccagatattttcaaaagtctacttcccaaccccacattcctggagaagnnnnnnnnttaacgatattttttag-gcctacttcagaacaacacaaaattc |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | |||||||||||||| ||||||||||| |
|
|
| T |
10351877 |
ccagatattttcaaaagtctacttcccaaccccacattcctggagaagaaaaaaaattaacgatatttttgaaagcctacttcagaacgacacaaaattc |
10351976 |
T |
|
| Q |
130 |
acgttttttccatccatcaaagt-------gggcatggaacgttccgccccatatagtttacaaattaactatatacagatccatccgtcgatgttaaat |
222 |
Q |
| |
|
||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
10351977 |
acgttttttccatccatcaaagtaatattagggcgcggaacgttccgccccatatagtttacaaattaactatatacagatccatgcgtcgatgttaaat |
10352076 |
T |
|
| Q |
223 |
aaatggtacgggagagttatcgatatacacacacaagctccctatagttatttcagttatcctaaacaaaaagcttctagatgtagtttaaacaaactct |
322 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10352077 |
aaatggtacgggagagttatcgatatacacacacaagctccctatagttatttcagttatcctaaacaaaaagcttctagatgtagtttaaacaaactct |
10352176 |
T |
|
| Q |
323 |
tgagtaaattataaagtacagaatattttttatatataaaaagaaggnnnnnnngtcaaaacaatgcatacatg |
396 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
10352177 |
tgagtaaattataaagtacagaatattttttatatataaaaagaaggaaaaaaagtcaaaacaatgcatacatg |
10352250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University