View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5336_low_3 (Length: 363)

Name: NF5336_low_3
Description: NF5336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5336_low_3
NF5336_low_3
[»] chr8 (13 HSPs)
chr8 (2-363)||(6140206-6140567)
chr8 (11-363)||(6187062-6187414)
chr8 (2-363)||(6178263-6178624)
chr8 (14-363)||(6045688-6046037)
chr8 (37-205)||(6124401-6124569)
chr8 (20-196)||(6087118-6087294)
chr8 (14-207)||(6042052-6042245)
chr8 (28-196)||(6061948-6062116)
chr8 (283-363)||(6087381-6087461)
chr8 (21-192)||(6195340-6195511)
chr8 (322-363)||(6062242-6062283)
chr8 (317-362)||(6124244-6124289)
chr8 (128-192)||(6071164-6071228)


Alignment Details
Target: chr8 (Bit Score: 326; Significance: 0; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 2 - 363
Target Start/End: Original strand, 6140206 - 6140567
Alignment:
Q  2 tctcgaagaatatcaaaggccatcttttgtagtaggtcatgcatttgtattctgtcattgtttgaaatggttataagagctttgtcttcgaggattttta 101  Q
    |||||||  ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  6140206 tctcgaactatatccaaggccatcttttgtagtaggtcatgcatttgtattctgtcattgtttgaaatggttataagagctttgtcttcaaggattttta 6140305  T
Q  102 tcccactagttgcattgtaaccataggcatctagtatccttgtgacaatatctttgttttcacctttgaaaaagaatgcaatgtctagaaacattacctt 201  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  6140306 tcccactagttgcattgtaaccataggcatctagtatccttgtgacaatatctttgttttcacctttgaaaaagaatgcaatgtctagaaacatttcctt 6140405  T
Q  202 ctctcgccatgataatccattataacttgctcttagcactttttgaatttcgtgaaaggctcaaccatttttcacataatcattcaactcggattcccag 301  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  || |||||||||||||||||||||||||||||||||    
T  6140406 ctctcgccatgataatccattataacttgctcttagcactttttgaatttcgtgaaaggctcccccctttttcacataatcattcaactcggattcccag 6140505  T
Q  302 aattctggttctctggaatgaaaatgtgaacccaaaacttgtaaagctaatggaacacctcc 363  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  6140506 aattctggttctctggaatgaaaatgtgaacccaaaacttgtaaagctaatggaacgcctcc 6140567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 11 - 363
Target Start/End: Original strand, 6187062 - 6187414
Alignment:
Q  11 atatcaaaggccatcttttgtagtaggtcatgcatttgtattctgtcattgtttgaaatggttataagagctttgtcttcgaggatttttatcccactag 110  Q
    ||||||||||||||||||||||||| ||| ||||||||||||||||| |||||||| ||||||||||||| ||| ||||||||||||| |||||||||||    
T  6187062 atatcaaaggccatcttttgtagtaagtcgtgcatttgtattctgtcgttgtttgagatggttataagagttttatcttcgaggatttctatcccactag 6187161  T
Q  111 ttgcattgtaaccataggcatctagtatccttgtgacaatatctttgttttcacctttgaaaaagaatgcaatgtctagaaacattaccttctctcgcca 210  Q
    |||||||| ||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||    
T  6187162 ttgcattgaaaccaaaggcatctagtatccttgtgacgatatctttgttttcacctttgaaaaagaatgcaatgtctagaaacatttccttctgtcgcca 6187261  T
Q  211 tgataatccattataacttgctcttagcactttttgaatttcgtgaaaggctcaaccatttttcacataatcattcaactcggattcccagaattctggt 310  Q
    |||||||||||||||||||| |||||||||||||||||| ||| | ||||||   || || ||| ||||   ||| ||||||||||||||||||||| ||    
T  6187262 tgataatccattataacttgttcttagcactttttgaatatcggggaaggcttctcctttgttctcatacaaatttaactcggattcccagaattcttgt 6187361  T
Q  311 tctctggaatgaaaatgtgaacccaaaacttgtaaagctaatggaacacctcc 363  Q
    | ||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  6187362 tttctggaatgaaaatgtgaacccaaaacttctaaagctaatggaacacctcc 6187414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 2 - 363
Target Start/End: Original strand, 6178263 - 6178624
Alignment:
Q  2 tctcgaagaatatcaaaggccatcttttgtagtaggtcatgcatttgtattctgtcattgtttgaaatggttataagagctttgtcttcgaggattttta 101  Q
    |||||||  ||||||||||||| ||||||||||| ||| ||||||||||||||    |||||||||||||||||||||| ||| ||||||||||||| ||    
T  6178263 tctcgaactatatcaaaggccaacttttgtagtaagtcgtgcatttgtattctactgttgtttgaaatggttataagagttttatcttcgaggatttcta 6178362  T
Q  102 tcccactagttgcattgtaaccataggcatctagtatccttgtgacaatatctttgttttcacctttgaaaaagaatgcaatgtctagaaacattacctt 201  Q
    ||||||||||||||||| ||||| ||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  6178363 tcccactagttgcattgaaaccaaaggcatcaagtatccttgtgacgatatctttgttttcacctttgaaaaagaatgcaatgtctagaaacatttcctt 6178462  T
Q  202 ctctcgccatgataatccattataacttgctcttagcactttttgaatttcgtgaaaggctcaaccatttttcacataatcattcaactcggattcccag 301  Q
    || |||||||||||||||||||||||||||| |||||||||||||||| ||| | |||| |   || || ||| ||||   ||||||||| |||||||||    
T  6178463 ctgtcgccatgataatccattataacttgcttttagcactttttgaatatcgggcaaggattctcctttattctcatacaaattcaactcagattcccag 6178562  T
Q  302 aattctggttctctggaatgaaaatgtgaacccaaaacttgtaaagctaatggaacacctcc 363  Q
    |||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  6178563 aattctggttttctggaatgaaaatgtgaacccaaaacttctaaagctaatggaacacctcc 6178624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 14 - 363
Target Start/End: Original strand, 6045688 - 6046037
Alignment:
Q  14 tcaaaggccatcttttgtagtaggtcatgcatttgtattctgtcattgtttgaaatggttataagagctttgtcttcgaggatttttatcccactagttg 113  Q
    ||||| ||||| | |||||||| ||| |||||||||||| | | ||  | |||||| || ||||||||||| ||||| ||| |   ||| ||||| |  |    
T  6045688 tcaaaagccatttgttgtagtaagtcgtgcatttgtattatattatcatatgaaatagtgataagagctttatcttcaagggtgactattccactggcag 6045787  T
Q  114 cattgtaaccataggcatctagtatccttgtgacaatatctttgttttcacctttgaaaaagaatgcaatgtctagaaacattaccttctctcgccatga 213  Q
    ||||| ||||| ||||||||||||| ||||| |||| |||| | |||||| ||||||||||||| ||||| |||| ||||||| |||| |||||   ||     
T  6045788 cattgaaaccacaggcatctagtattcttgtcacaaaatctcttttttcatctttgaaaaagaacgcaatatctaaaaacatttccttttctcggactgt 6045887  T
Q  214 taatccattataacttgctcttagcactttttgaatttcgtgaaaggctcaaccatttttcacataatcattcaactcggattcccagaattctggttct 313  Q
    |||||||||||| ||| |||||| ||||| ||||||| |  | |||| |   || || ||| |  |||  ||||| || | |||||||||||| ||   |    
T  6045888 taatccattatagcttactcttaacacttcttgaattccacgtaaggattcccccttgttctccaaatttttcaattcaggttcccagaattcaggactt 6045987  T
Q  314 ctggaatgaaaatgtgaacccaaaacttgtaaagctaatggaacacctcc 363  Q
    || |||| |||||||||||||||||||| ||||||||||||||| |||||    
T  6045988 ctagaataaaaatgtgaacccaaaacttttaaagctaatggaacgcctcc 6046037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 37 - 205
Target Start/End: Complemental strand, 6124569 - 6124401
Alignment:
Q  37 gtcatgcatttgtattctgtcattgtttgaaatggttataagagctttgtcttcgaggatttttatcccactagttgcattgtaaccataggcatctagt 136  Q
    |||||||||||||||| |||  |  ||||||||||| ||||||||||| ||||  ||||| | ||| |||||||| ||||   | ||| | |||||||||    
T  6124569 gtcatgcatttgtattttgttgtcatttgaaatggtgataagagctttatctttaaggatatgtattccactagtagcatcaaagccacaagcatctagt 6124470  T
Q  137 atccttgtgacaatatctttgttttcacctttgaaaaagaatgcaatgtctagaaacattaccttctct 205  Q
    || ||||| |||| |||||| |||||| |||||||||||||||||||||||||||||||| | ||||||    
T  6124469 atacttgtaacaaaatctttattttcatctttgaaaaagaatgcaatgtctagaaacatttctttctct 6124401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 20 - 196
Target Start/End: Original strand, 6087118 - 6087294
Alignment:
Q  20 gccatcttttgtagtaggtcatgcatttgtattctgtcattgtttgaaatggttataagagctttgtcttcgaggatttttatcccactagttgcattgt 119  Q
    ||||| ||||||||||  |||||||||||||| ||||   || ||||||| |||| ||||||||| ||||| ||||| | ||| |||||| | ||||||     
T  6087118 gccattttttgtagtaaatcatgcatttgtatcctgttgctgcttgaaattgttacaagagctttttcttcaaggatctgtattccactactagcattga 6087217  T
Q  120 aaccataggcatctagtatccttgtgacaatatctttgttttcacctttgaaaaagaatgcaatgtctagaaacatt 196  Q
    |||||   |||   ||||||||| |||||| |||||| |||||| |||||||||||||||| ||||  |||||||||    
T  6087218 aaccacttgcactaagtatccttatgacaaaatctttattttcatctttgaaaaagaatgcgatgttcagaaacatt 6087294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 14 - 207
Target Start/End: Original strand, 6042052 - 6042245
Alignment:
Q  14 tcaaaggccatcttttgtagtaggtcatgcatttgtattctgtcattgtttgaaatggttataagagctttgtcttcgaggatttttatcccactagttg 113  Q
    ||||| ||||| | |||||||| ||| |||||||||||| | | ||  | |||||| || ||||||||||| ||||| ||| |   ||| ||||| |  |    
T  6042052 tcaaaagccatttgttgtagtaagtcgtgcatttgtattatattatcatatgaaatagtgataagagctttatcttcaagggtgactattccactggcag 6042151  T
Q  114 cattgtaaccataggcatctagtatccttgtgacaatatctttgttttcacctttgaaaaagaatgcaatgtctagaaacattaccttctctcg 207  Q
    ||||| ||||| ||||||||||||| ||||| |||| |||| | |||||| ||||||||||||| ||||| |||| ||||||| |||| |||||    
T  6042152 cattgaaaccacaggcatctagtattcttgtcacaaaatctcttttttcatctttgaaaaagaacgcaatatctaaaaacatttccttttctcg 6042245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 28 - 196
Target Start/End: Original strand, 6061948 - 6062116
Alignment:
Q  28 ttgtagtaggtcatgcatttgtattctgtcattgtttgaaatggttataagagctttgtcttcgaggatttttatcccactagttgcattgtaaccatag 127  Q
    |||||||| ||||||||||||||||||||   | |||||||| || ||||||||||| ||||  ||| | | ||| ||||   ||||| || ||||  |     
T  6061948 ttgtagtaagtcatgcatttgtattctgttggtctttgaaattgtaataagagctttatctttaaggctctctattccaccgattgcactgaaaccgcat 6062047  T
Q  128 gcatctagtatccttgtgacaatatctttgttttcacctttgaaaaagaatgcaatgtctagaaacatt 196  Q
    ||||| ||||||||  | |||| |||||| |||||| |||||||||||||||||| ||| |||||||||    
T  6062048 gcatcaagtatcctgataacaaaatctttattttcatctttgaaaaagaatgcaacgtcaagaaacatt 6062116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 283 - 363
Target Start/End: Original strand, 6087381 - 6087461
Alignment:
Q  283 attcaactcggattcccagaattctggttctctggaatgaaaatgtgaacccaaaacttgtaaagctaatggaacacctcc 363  Q
    |||||| || ||||||||||||||  | | ||| |||| ||||  |||||||||||||| |||||||||||||||||||||    
T  6087381 attcaattcagattcccagaattcaagatttcttgaataaaaaaatgaacccaaaacttttaaagctaatggaacacctcc 6087461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 21 - 192
Target Start/End: Original strand, 6195340 - 6195511
Alignment:
Q  21 ccatcttttgtagtaggtcatgcatttgtattctgtcattgtttgaaatggttataagagctttgtcttcgaggatttttatcccactagttgcattgta 120  Q
    |||| ||||| |||| |||||||||||||||| | |  || ||||| || ||||| | ||| ||||||| ||||| |  ||| || ||| |||  | | |    
T  6195340 ccattttttgcagtaagtcatgcatttgtattgtttggttatttgagatagttatcaaagccttgtctttgaggactactattccgctatttggttcgaa 6195439  T
Q  121 accataggcatctagtatccttgtgacaatatctttgttttcacctttgaaaaagaatgcaatgtctagaaa 192  Q
    |||| | |||||||||||| ||||||||   ||||| ||||| ||| |||| ||||||||||||||||||||    
T  6195440 accacaagcatctagtatctttgtgacagactctttcttttctcctatgaagaagaatgcaatgtctagaaa 6195511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 322 - 363
Target Start/End: Original strand, 6062242 - 6062283
Alignment:
Q  322 aaaatgtgaacccaaaacttgtaaagctaatggaacacctcc 363  Q
    ||||||| |||| ||||||| |||||||||||||||||||||    
T  6062242 aaaatgtaaacctaaaacttttaaagctaatggaacacctcc 6062283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 317 - 362
Target Start/End: Complemental strand, 6124289 - 6124244
Alignment:
Q  317 gaatgaaaatgtgaacccaaaacttgtaaagctaatggaacacctc 362  Q
    ||||| ||||| ||||||||||||| ||||||||| ||||||||||    
T  6124289 gaatgtaaatgcgaacccaaaacttttaaagctaagggaacacctc 6124244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 128 - 192
Target Start/End: Original strand, 6071164 - 6071228
Alignment:
Q  128 gcatctagtatccttgtgacaatatctttgttttcacctttgaaaaagaatgcaatgtctagaaa 192  Q
    |||||||||||||| |  |||  |||||| ||||| ||| ||||||||||||| |||||||||||    
T  6071164 gcatctagtatcctcgcaacacaatctttcttttctcctatgaaaaagaatgctatgtctagaaa 6071228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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