View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5336_low_4 (Length: 302)
Name: NF5336_low_4
Description: NF5336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5336_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 222; Significance: 1e-122; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 6 - 267
Target Start/End: Original strand, 24168915 - 24169176
Alignment:
| Q |
6 |
aagacggagaagctgttttgaaatatttggaggagaataaaatggttttaccggaaaatgctgatgtggcaaaatgtttcctcgctggagaccgtgccgg |
105 |
Q |
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| T |
24168915 |
aagacggagaagctgttttgaaatatttggaggagaataaaatggttttaccggaaaatgctgacgtgtcaaaatgtttcctcgccggagacagtgccgg |
24169014 |
T |
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| Q |
106 |
tgcaaatatggcacatcaccttgcagttagggtttgtaaagaagggctccaggaaatccgggttatcgggttggtatcgattcagccgttttttggcggg |
205 |
Q |
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| T |
24169015 |
tgcaaatttggcacatcaccttgcagttagggtttgtaaagaagggctccaggaaatccggattatcgggttggtattgattcagccgttttttggcggg |
24169114 |
T |
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| Q |
206 |
gaggaacggatcgaggcggagattaaacttgagggatctccgttggtgtcgatggaaaggac |
267 |
Q |
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| T |
24169115 |
gaggaacagaccgaggcggagattaaacttgagggatctccgttggtgttgatggaaaggac |
24169176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 11 - 267
Target Start/End: Original strand, 24152093 - 24152349
Alignment:
| Q |
11 |
ggagaagctgttttgaaatatttggaggagaataaaatggttttaccggaaaatgctgatgtggcaaaatgtttcctcgctggagaccgtgccggtgcaa |
110 |
Q |
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| T |
24152093 |
ggagaggctgtgctgaaatttttggaagagaataaaacggttttaccggaaaatgctgacgtgtcaaaatgtttccttgccggagacagttctggtgcaa |
24152192 |
T |
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| Q |
111 |
atatggcacatcaccttgcagttagggtttgtaaagaagggctccaggaaatccgggttatcgggttggtatcgattcagccgttttttggcggggagga |
210 |
Q |
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| T |
24152193 |
atttagcacaccatcttacagttagggtttgtaaagcagggctccgggaaatccggattatcgggttggtatcgattcagccgttttttggcggggagga |
24152292 |
T |
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| Q |
211 |
acggatcgaggcggagattaaacttgagggatctccgttggtgtcgatggaaaggac |
267 |
Q |
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| T |
24152293 |
gaggactgaggcggagattaaacttgatggatcgccgttggtgtctatggcaaggac |
24152349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 6 - 260
Target Start/End: Original strand, 24112800 - 24113054
Alignment:
| Q |
6 |
aagacggagaagctgttttgaaatatttggaggagaataaaatggttttaccggaaaatgctgatgtggcaaaatgtttcctcgctggagaccgtgccgg |
105 |
Q |
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| T |
24112800 |
aagacggagaagctgttttgaaatatttggacgagaataaaacggttttaccggaaaatgctgacgtgtcaaaatgtttcctcgccggagacagtgccgg |
24112899 |
T |
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| Q |
106 |
tgcaaatatggcacatcaccttgcagttagggtttgtaaagaagggctccaggaaatccgggttatcgggttggtatcgattcagccgttttttggcggg |
205 |
Q |
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| T |
24112900 |
tgcaaatttagcacatcatgttgcggttcgggtttgtaaagcggggctccgggaaatccgggttattgggttggtatccatccagccgttttttggaggg |
24112999 |
T |
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| Q |
206 |
gaggaacggatcgaggcggagattaaacttgagggatctccgttggtgtcgatgg |
260 |
Q |
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| T |
24113000 |
gaggagaggacggaggcggagattaggctcgagggatcacccttagtgtcgatgg |
24113054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 50 - 210
Target Start/End: Original strand, 24107719 - 24107879
Alignment:
| Q |
50 |
gttttaccggaaaatgctgatgtggcaaaatgtttcctcgctggagaccgtgccggtgcaaatatggcacatcaccttgcagttagggtttgtaaagaag |
149 |
Q |
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| T |
24107719 |
gttttaccggaaaatgttgatgtgtcaaaatgtttcctagctggagacagcgcgggtgcaaatttggcacatcatgttgcggttcgggcttgcaaagcag |
24107818 |
T |
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| Q |
150 |
ggctccaggaaatccgggttatcgggttggtatcgattcagccgttttttggcggggagga |
210 |
Q |
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| T |
24107819 |
ggctccagagaatccgggtagccgggttgatttcaatgcaaccgttttttggtggcgagga |
24107879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 50 - 231
Target Start/End: Original strand, 24179395 - 24179576
Alignment:
| Q |
50 |
gttttaccggaaaatgctgatgtggcaaaatgtttcctcgctggagaccgtgccggtgcaaatatggcacatcaccttgcagttagggtttgtaaagaag |
149 |
Q |
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| T |
24179395 |
gttttaccggcaaatgctgacctgtcaaaatgtttcctagcaggagatagtgccggtggaaatttggcacacgatgttgtggttagggcatgcaaaacgg |
24179494 |
T |
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| Q |
150 |
ggctccaggaaatccgggttatcgggttggtatcgattcagccgttttttggcggggaggaacggatcgaggcggagattaa |
231 |
Q |
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| T |
24179495 |
ggctccagaacatccgggttatcgggttaatattgatccaaccattcttcggtggagaagaacggacggaggcggagattaa |
24179576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 50 - 229
Target Start/End: Original strand, 24189201 - 24189380
Alignment:
| Q |
50 |
gttttaccggaaaatgctgatgtggcaaaatgtttcctcgctggagaccgtgccggtgcaaatatggcacatcaccttgcagttagggtttgtaaagaag |
149 |
Q |
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| T |
24189201 |
gttttaccggaaaatactgacgtgtcaaaatgtttcctagccggagatagcgccggtggaaatttggtacaccatgttgcggttagggcatgcaaagcgg |
24189300 |
T |
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| Q |
150 |
ggctccaggaaatccgggttatcgggttggtatcgattcagccgttttttggcggggaggaacggatcgaggcggagatt |
229 |
Q |
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| T |
24189301 |
ggctccagaatatctgtgttatcgggtcaatattgatccaaccgtttttcggaggagaagaacggacggaggcagagatt |
24189380 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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