View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5336_low_5 (Length: 290)
Name: NF5336_low_5
Description: NF5336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5336_low_5 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 268; Significance: 1e-150; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 268; E-Value: 1e-150
Query Start/End: Original strand, 8 - 290
Target Start/End: Original strand, 3233666 - 3233949
Alignment:
| Q |
8 |
tactatgaacagagaaa-aaattagattcaacaatgataataagagcatgtaccacaaaacacatagagatggcaaattttaactaacaagaataaaaat |
106 |
Q |
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| T |
3233666 |
tactatgaacagagaaataaattagattcaacaatgataataagagcatgtaccacaaaacacatagagatggcaaattttaactaacaagaataaaaat |
3233765 |
T |
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| Q |
107 |
aaattaaaacgattcttgctcaacaaatcagtgtagacatgcacgaactagttaaactattctcttccaccctcaagtacggcacaccgtgttttgaggt |
206 |
Q |
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| T |
3233766 |
aaattaaaacgattcttgctcaacaaatcagtgtagacatgcacgaactagttaaactattctcttccaccctcaagtacggcacaccgtgttttgaggt |
3233865 |
T |
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| Q |
207 |
aatgtctgttttgagtgtaagctcatcatacagttttgtcctttataaaaggcatctcatagaaaataatcatataaaatccat |
290 |
Q |
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| T |
3233866 |
aatgtccgttttgagtgtaagctcatcatacagttttgtcctttataaaagacatctcatagaaaataatcatataaaatccat |
3233949 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 98 - 228
Target Start/End: Original strand, 3228538 - 3228675
Alignment:
| Q |
98 |
aataaaaataaattaaaacgattcttgctcaacaaatcagtgtagacatgcacgaactagttaaactattct-------cttccaccctcaagtacggca |
190 |
Q |
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| T |
3228538 |
aataaaaataaattaaaacgattctcactcgtcaaatcagagtagaaatgcacaaactatttaaactatttttttccactttccaccctcaagtacggtg |
3228637 |
T |
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| Q |
191 |
caccgtgttttgaggtaatgtctgttttgagtgtaagc |
228 |
Q |
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| T |
3228638 |
caccgtgttttgaggtatggtccattttgggtgtaagc |
3228675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 166 - 219
Target Start/End: Original strand, 21159853 - 21159906
Alignment:
| Q |
166 |
ttctcttccaccctcaagtacggcacaccgtgttttgaggtaatgtctgttttg |
219 |
Q |
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| T |
21159853 |
ttctgttccaccctcaagtatgtcacaccgtgttttgaggtattgtctgctttg |
21159906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 171 - 258
Target Start/End: Original strand, 32989165 - 32989250
Alignment:
| Q |
171 |
ttccaccctcaagtacggcacaccgtgttttgaggtaatgtctgttttgagtgtaagctcatcatacagttttgtcctttataaaagg |
258 |
Q |
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| T |
32989165 |
ttccaccctcaagtacatcacaccgcattttgaggccttgtctgctttgagtgtatgcccttc--acagttttgtcctttataaaagg |
32989250 |
T |
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