View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5336_low_6 (Length: 286)
Name: NF5336_low_6
Description: NF5336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5336_low_6 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 10 - 286
Target Start/End: Complemental strand, 30781817 - 30781553
Alignment:
| Q |
10 |
attattctttgattcttaacatattcatcccttctggtgatttgttannnnnnnagtcactaatcgcctaatttatgattattgcttatgattattccat |
109 |
Q |
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| T |
30781817 |
attattctttgattcttaacatattcatcccttctggtgatttgttatttttttagtcactaatcgcctaatttatgattattcc--atgcttatt---- |
30781724 |
T |
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| Q |
110 |
gcttactataatgaaaaatccaattcacaaactatgcatcgttaaaatttgcattttaataataggtcttcaggtttactgctaggaataaattggacca |
209 |
Q |
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| T |
30781723 |
----actataatgaaaaatccaattcacaaactatgcatcgttaaaatttgcattttaataataggtcttcaggtttactgctaggaataagttggacca |
30781628 |
T |
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| Q |
210 |
aaacctatctcatcgaaggtagtgaagcatgagatgtagagaggaagagggtaactggaagacaaaaatgaagcaaa |
286 |
Q |
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| T |
30781627 |
aaacctatctcatcgaaggtagtgaagcatgagatgt--agaggaagagggtaactggaagacaaaaatgaagcaaa |
30781553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 10 - 160
Target Start/End: Complemental strand, 30782019 - 30781879
Alignment:
| Q |
10 |
attattctttgattcttaacatattcatcccttctggtgatttgttannnnnnnagtcactaatcgcctaatttatgattattgcttatgattattccat |
109 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | ||| ||| |
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| T |
30782019 |
attattctttgattcttaacatattcatcccttctggtgatttgttatttttttagtcactaatcgcctaatttatgattattcc--atgctta------ |
30781928 |
T |
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| Q |
110 |
gcttactataatgaaaaatccaattcacaaactatgcatcgttaaaatttg |
160 |
Q |
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| T |
30781927 |
--ttactataatgaaaaatccaattcacaaactatgcatcgttaaaatttg |
30781879 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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