View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5336_low_7 (Length: 286)
Name: NF5336_low_7
Description: NF5336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5336_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 260; Significance: 1e-145; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 20 - 279
Target Start/End: Complemental strand, 6141065 - 6140806
Alignment:
| Q |
20 |
ggaatttggggcatgagtggaataggaaagacaaccatagcaaaacagatgtttgccaagaactttccctattatgataatgtatgcttcttggaaaaga |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6141065 |
ggaatttggggcatgagtggaataggaaagacaaccatagcaaaacagatgtttgccaagaactttccctattatgataatgtatgcttcttggaaaaga |
6140966 |
T |
|
| Q |
120 |
taaatgaagaatcagaaaagttcggacaaatatatgttcgtaataagcttcttagtgagctactgaagcagaaaattacagcatctgatgttcatggact |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6140965 |
taaatgaagaatcagaaaagttcggacaaatatatgttcgtaataagcttcttagtgagctactgaagcagaaaattacagcatctgatgttcatggact |
6140866 |
T |
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| Q |
220 |
tcacacattcatcaaaacgaggctctttcgcaaaaaagttttcattgtacttgatgatgt |
279 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6140865 |
tcacacattcatcaaaacgaggctctttcgcaaaaaagttttcattgtacttgatgatgt |
6140806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 20 - 279
Target Start/End: Complemental strand, 6179122 - 6178863
Alignment:
| Q |
20 |
ggaatttggggcatgagtggaataggaaagacaaccatagcaaaacagatgtttgccaagaactttccctattatgataatgtatgcttcttggaaaaga |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| ||||||||||||||||||||| |
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| T |
6179122 |
ggaatttggggcatgagtggaataggaaagacaaccatagcaaaacagatgtttgccaagaactttgcccattatgacaatgtatgcttcttggaaaagg |
6179023 |
T |
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| Q |
120 |
taaatgaagaatcagaaaagttcggacaaatatatgttcgtaataagcttcttagtgagctactgaagcagaaaattacagcatctgatgttcatggact |
219 |
Q |
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| T |
6179022 |
taagcgaagactcagaaaagttgggaccaatatatgttcgtaatcagcttcttcgtgagctactgaagcgagaaattacagcgtctgatgttcatggact |
6178923 |
T |
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| Q |
220 |
tcacacattcatcaaaacgaggctctttcgcaaaaaagttttcattgtacttgatgatgt |
279 |
Q |
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|||||| |||||||| | |||||||||||||||||||||||||||||||||||||||||| |
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| T |
6178922 |
tcacacgttcatcaagaggaggctctttcgcaaaaaagttttcattgtacttgatgatgt |
6178863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 20 - 279
Target Start/End: Complemental strand, 6187912 - 6187653
Alignment:
| Q |
20 |
ggaatttggggcatgagtggaataggaaagacaaccatagcaaaacagatgtttgccaagaactttccctattatgataatgtatgcttcttggaaaaga |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || ||||||| |||||||||||||||||||||| |
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| T |
6187912 |
ggaatttggggcatgagtggaataggaaagacaaccatagcaaaacagatgttttccaagaactttgcccattatgacaatgtatgcttcttggaaaaga |
6187813 |
T |
|
| Q |
120 |
taaatgaagaatcagaaaagttcggacaaatatatgttcgtaataagcttcttagtgagctactgaagcagaaaattacagcatctgatgttcatggact |
219 |
Q |
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||| ||||| || |||||||| |||| |||||||||| ||||| |||||||| ||||||||||||||| |||||||||| ||||||||||| ||||| |
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| T |
6187812 |
taagcgaagactcggaaaagtttggaccaatatatgtttgtaatcagcttcttcgtgagctactgaagcgagaaattacagcgtctgatgttcacggact |
6187713 |
T |
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| Q |
220 |
tcacacattcatcaaaacgaggctctttcgcaaaaaagttttcattgtacttgatgatgt |
279 |
Q |
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|||||||||||||| | |||||||||||||||||||||||||||||| ||||||||||| |
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| T |
6187712 |
tcacacattcatcacgaggaggctctttcgcaaaaaagttttcattgttcttgatgatgt |
6187653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 20 - 217
Target Start/End: Complemental strand, 6046532 - 6046335
Alignment:
| Q |
20 |
ggaatttggggcatgagtggaataggaaagacaaccatagcaaaacagatgtttgccaagaactttccctattatgataatgtatgcttcttggaaaaga |
119 |
Q |
| |
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||||||||||||||| |||||||||| |||||||||||||| | |||||||||||| ||| ||||| | | ||||| | | ||||| ||||||| |
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| T |
6046532 |
ggaatttggggcatgggtggaatagggaagacaaccatagccagacagatgtttgcaaagcactttgcacaatatgaaagcgcttgctttatggaaaatg |
6046433 |
T |
|
| Q |
120 |
taaatgaagaatcagaaaagttcggacaaatatatgttcgtaataagcttcttagtgagctactgaagcagaaaattacagcatctgatgttcatgga |
217 |
Q |
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||| ||||||| ||||||||| |||| || || | ||||||||||||||||||||||| || |||| ||||||| ||||| ||| ||| |||| |
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| T |
6046432 |
taagtgaagaaatagaaaagtttggaccaaggtacatccgtaataagcttcttagtgagctgcttaagcgacaaattactgcatcggatattcttgga |
6046335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 20 - 85
Target Start/End: Complemental strand, 6062775 - 6062710
Alignment:
| Q |
20 |
ggaatttggggcatgagtggaataggaaagacaaccatagcaaaacagatgtttgccaagaacttt |
85 |
Q |
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||||||||||||||| | ||||||||||||||||||||||| | |||||||||||||||| ||||| |
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| T |
6062775 |
ggaatttggggcatgggaggaataggaaagacaaccatagccagacagatgtttgccaagcacttt |
6062710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 20 - 183
Target Start/End: Complemental strand, 6087953 - 6087790
Alignment:
| Q |
20 |
ggaatttggggcatgagtggaataggaaagacaaccatagcaaaacagatgtttgccaagaactttccctattatgataatgtatgcttcttggaaaaga |
119 |
Q |
| |
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||||| ||||||||| | ||||| ||||||||||||||||| | ||| |||||||||||| ||||| | | ||||| | | ||||| |||||||| |
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| T |
6087953 |
ggaatatggggcatgggaggaatcggaaagacaaccatagccagacaaatgtttgccaagcactttgcagaatatgacagcgcttgctttttggaaaatg |
6087854 |
T |
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| Q |
120 |
taaatgaagaatcagaaaagttcggacaaatatatgttcgtaataagcttcttagtgagctact |
183 |
Q |
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||| |||||| || ||| |||||| |||| ||||||||||||| |||||| |||||||||| |
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| T |
6087853 |
taagtgaagatgtagtaaaactcggactaatacatgttcgtaataaccttcttggtgagctact |
6087790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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