View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5336_low_8 (Length: 269)

Name: NF5336_low_8
Description: NF5336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5336_low_8
NF5336_low_8
[»] chr5 (2 HSPs)
chr5 (1-246)||(3233938-3234183)
chr5 (12-64)||(3228758-3228810)
[»] chr7 (11 HSPs)
chr7 (68-221)||(22036933-22037086)
chr7 (68-230)||(22021230-22021392)
chr7 (71-243)||(16839454-16839626)
chr7 (73-244)||(18326045-18326216)
chr7 (1-63)||(22011162-22011224)
chr7 (71-243)||(16846537-16846709)
chr7 (2-57)||(18322694-18322749)
chr7 (2-64)||(22028928-22028990)
chr7 (21-64)||(16839096-16839139)
chr7 (136-204)||(22019217-22019285)
chr7 (11-63)||(22021694-22021746)
[»] chr3 (1 HSPs)
chr3 (24-64)||(3866199-3866239)


Alignment Details
Target: chr5 (Bit Score: 238; Significance: 1e-132; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 3233938 - 3234183
Alignment:
Q  1 tataaaatccatcatagaaaataatcacacaacatacaagaattaacagaaattcaaataaatcaattgggttttcttgacaacgtgggaaaagcagagg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3233938 tataaaatccatcatagaaaataatcacacaacatacaagaattaacagaaattcaaataaatcaattgggttttcttgacaacgtgggaaaagcagagg 3234037  T
Q  101 caatccatcaaaacacatagagatggctcaaaacatggcacttgatcaaaaccttgaggaagaagcaactctttgtatgtctttttactcagatcaagtg 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||    
T  3234038 caatccatcaaaacacatagagatggctcaaaacatggcacttgatcaaaaccttgaggaagaagcaactctttgtatgtctgtttactcagataaagtg 3234137  T
Q  201 aaataatcacatattgctcaaaaggaatattcttgcaatcataacg 246  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  3234138 aaataatcacatattgctcaaaaggaatattcttgcaatcataacg 3234183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 12 - 64
Target Start/End: Original strand, 3228758 - 3228810
Alignment:
Q  12 tcatagaaaataatcacacaacatacaagaattaacagaaattcaaataaatc 64  Q
    ||||||||||||||||||||  |||||||||||||| ||||||||||||||||    
T  3228758 tcatagaaaataatcacacagtatacaagaattaacggaaattcaaataaatc 3228810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 70; Significance: 1e-31; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 68 - 221
Target Start/End: Complemental strand, 22037086 - 22036933
Alignment:
Q  68 tgggttttcttgacaacgtgggaaaagcagaggcaatccatcaaaacacatagagatggctcaaaacatggcacttgatcaaaaccttgaggaagaagca 167  Q
    ||||||||||||||||  || ||||| || | |||||||||||| |||||||||||||||||| ||||||| ||||  ||||||||| |||| |||||||    
T  22037086 tgggttttcttgacaagatgagaaaaacaaatgcaatccatcaacacacatagagatggctcataacatgggacttcgtcaaaacctcgagggagaagca 22036987  T
Q  168 actctttgtatgtctttttactcagatcaagtgaaataatcacatattgctcaa 221  Q
    |||||||| |||||| | ||| ||||||||||| || ||||| | |||||||||    
T  22036986 actctttgcatgtctctgtacgcagatcaagtgcaacaatcataaattgctcaa 22036933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 68 - 230
Target Start/End: Complemental strand, 22021392 - 22021230
Alignment:
Q  68 tgggttttcttgacaacgtgggaaaagcagaggcaatccatcaaaacacatagagatggctcaaaacatggcacttgatcaaaaccttgaggaagaagca 167  Q
    ||||||||||| ||||  || ||||| || | |||||||||||| |||||||||||||||||||||| ||| |||| |||||||||| | || |||||||    
T  22021392 tgggttttcttcacaagatgagaaaaacaaatgcaatccatcaacacacatagagatggctcaaaacttgggacttcatcaaaacctcgcgggagaagca 22021293  T
Q  168 actctttgtatgtctttttactcagatcaagtgaaataatcacatattgctcaaaaggaatat 230  Q
    |||||||| ||||||   |||  ||||||||||||| ||||  | ||||||||| || |||||    
T  22021292 actctttgcatgtctccgtaccaagatcaagtgaaacaatcttaaattgctcaatagtaatat 22021230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 71 - 243
Target Start/End: Original strand, 16839454 - 16839626
Alignment:
Q  71 gttttcttgacaacgtgggaaaagcagaggcaatccatcaaaacacatagagatggctcaaaacatggcacttgatcaaaaccttgaggaagaagcaact 170  Q
    |||||||| ||||| || ||||| || ||||| |||||||| | ||| | |||||||| || | ||||||||| | |||||||| ||||  ||||||| |    
T  16839454 gttttcttaacaacatgagaaaaacaaaggcagtccatcaacagacaaatagatggcttaataaatggcacttcaacaaaacctcgagggggaagcaaat 16839553  T
Q  171 ctttgtatgtctttttactcagatcaagtgaaataatcacatattgctcaaaaggaatattcttgcaatcata 243  Q
     |||||||||||   | | || ||||||||||||||||||| ||||||||| || || || ||||||||||||    
T  16839554 atttgtatgtctccgtgcccaaatcaagtgaaataatcacaaattgctcaacagtaagatccttgcaatcata 16839626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 73 - 244
Target Start/End: Complemental strand, 18326216 - 18326045
Alignment:
Q  73 tttcttgacaacgtgggaaaagcagaggcaatccatcaaaacacatagagatggctcaaaacatggcacttgatcaaaaccttgaggaagaagcaactct 172  Q
    |||||||||||| || ||||| || |||||||||| |||  ||||||||||||||| || |  ||| ||||   |||||||| ||||  ||||||| |||    
T  18326216 tttcttgacaacatgagaaaaacaaaggcaatccagcaactcacatagagatggcttaacatgtggtacttctgcaaaacctcgaggcggaagcaaatct 18326117  T
Q  173 ttgtatgtctttttactcagatcaagtgaaataatcacatattgctcaaaaggaatattcttgcaatcataa 244  Q
    ||| ||||||   | | || |||||||||||||||| || ||||||||| |  |||||||||||||||||||    
T  18326116 ttgcatgtctccgtgcccaaatcaagtgaaataatcgcaaattgctcaacaataatattcttgcaatcataa 18326045  T

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Target: chr7; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 22011224 - 22011162
Alignment:
Q  1 tataaaatccatcatagaaaataatcacacaacatacaagaattaacagaaattcaaataaat 63  Q
    |||||||| |||||||||||||||| ||| |||||||||||||||||||||||| ||||||||    
T  22011224 tataaaattcatcatagaaaataataacataacatacaagaattaacagaaattaaaataaat 22011162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 71 - 243
Target Start/End: Original strand, 16846537 - 16846709
Alignment:
Q  71 gttttcttgacaacgtgggaaaagcagaggcaatccatcaaaacacatagagatggctcaaaacatggcacttgatcaaaaccttgaggaagaagcaact 170  Q
    |||| ||||||||| || ||||| || ||||| |||||||| | ||| | |||||||| || | ||||||||| | |||||||| ||||  ||||||| |    
T  16846537 gtttgcttgacaacatgagaaaaacaaaggcagtccatcaacagacaaatagatggcttaataaatggcacttcaacaaaacctcgagggggaagcaaat 16846636  T
Q  171 ctttgtatgtctttttactcagatcaagtgaaataatcacatattgctcaaaaggaatattcttgcaatcata 243  Q
     |||||||||||   | | || |||||| |||||||||||| ||||||||| || || || ||||||||||||    
T  16846637 atttgtatgtctccgtgcccaaatcaagagaaataatcacaaattgctcaacagtaagatccttgcaatcata 16846709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 2 - 57
Target Start/End: Complemental strand, 18322749 - 18322694
Alignment:
Q  2 ataaaatccatcatagaaaataatcacacaacatacaagaattaacagaaattcaa 57  Q
    ||||||||||||||| || ||||||| |||||||| ||||||||||||||||||||    
T  18322749 ataaaatccatcatataacataatcaaacaacatataagaattaacagaaattcaa 18322694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 2 - 64
Target Start/End: Complemental strand, 22028990 - 22028928
Alignment:
Q  2 ataaaatccatcatagaaaataatcacacaacatacaagaattaacagaaattcaaataaatc 64  Q
    |||||| ||| ||||||||||| |||||||||||  |||||| ||||||||||||||||||||    
T  22028990 ataaaagccaccatagaaaatagtcacacaacatggaagaataaacagaaattcaaataaatc 22028928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 64
Target Start/End: Original strand, 16839096 - 16839139
Alignment:
Q  21 ataatcacacaacatacaagaattaacagaaattcaaataaatc 64  Q
    ||||||| ||||||||||||||||||| ||||||||||||||||    
T  16839096 ataatcaaacaacatacaagaattaacggaaattcaaataaatc 16839139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 136 - 204
Target Start/End: Complemental strand, 22019285 - 22019217
Alignment:
Q  136 tggcacttgatcaaaaccttgaggaagaagcaactctttgtatgtctttttactcagatcaagtgaaat 204  Q
    ||||||||||||||| ||| ||||  ||| ||||||||||||||||| | | | |||||||||||||||    
T  22019285 tggcacttgatcaaatcctcgaggcggaatcaactctttgtatgtctctgtccccagatcaagtgaaat 22019217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 63
Target Start/End: Complemental strand, 22021746 - 22021694
Alignment:
Q  11 atcatagaaaataatcacacaacatacaagaattaacagaaattcaaataaat 63  Q
    |||||| |||||| ||||| ||||| |||||||||||||||| | ||||||||    
T  22021746 atcatataaaatagtcacataacattcaagaattaacagaaaataaaataaat 22021694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 64
Target Start/End: Complemental strand, 3866239 - 3866199
Alignment:
Q  24 atcacacaacatacaagaattaacagaaattcaaataaatc 64  Q
    |||| |||||||||||||||||||  |||||||||||||||    
T  3866239 atcaaacaacatacaagaattaacgaaaattcaaataaatc 3866199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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