View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5337_high_3 (Length: 457)
Name: NF5337_high_3
Description: NF5337
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5337_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 197; Significance: 1e-107; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 214 - 442
Target Start/End: Original strand, 43213278 - 43213506
Alignment:
| Q |
214 |
ttgcatgcatgtggaaagtaataataattgaaaaccaaaacattcagaaagtaaaaatgtggacttacgtacctgcataagaagagcatccatgtcagct |
313 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
43213278 |
ttgcatgcatgtggaaagtaataataattgaaaaccaaaacattcagaaagtaaaaatgtggacttacgtacctgcataagaagagcatccatctcagct |
43213377 |
T |
|
| Q |
314 |
ctaagagcgacaaaaggaggaagaccagttcctatgtaaccaataacacctgtaactgcaactggatgtttatattgaacacccaactcatccaattttg |
413 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| | ||||| || ||||| ||||||| |
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| T |
43213378 |
ctaagagcgacaaaaggaggaagaccagttcctatgtaaccaataacacctgtcactacaactggatgtttatatgggacacctaattcatctaattttg |
43213477 |
T |
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| Q |
414 |
ttcttataagcttactggtttcaaattct |
442 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
43213478 |
ttcttataagcttactggtttcaaattct |
43213506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 215 - 442
Target Start/End: Complemental strand, 41654884 - 41654657
Alignment:
| Q |
215 |
tgcatgcatgtggaaagtaataataattgaaaaccaaaacattcagaaagtaaaaatgtggacttacgtacctgcataagaagagcatccatgtcagctc |
314 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| |
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| T |
41654884 |
tgcatgcatgtggaaagtaataataattgaaaaccaaaacattcagaaagtaaaaatgtggacctacgtacctgcataagaagagcatccatttcagctc |
41654785 |
T |
|
| Q |
315 |
taagagcgacaaaaggaggaagaccagttcctatgtaaccaataacacctgtaactgcaactggatgtttatattgaacacccaactcatccaattttgt |
414 |
Q |
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| T |
41654784 |
tgagagcgacaaaaggaggaagaccagttcctatgtaaccaataacacctgtcactgcaactggatgtttatatgtaacacccaattcatccaattttgt |
41654685 |
T |
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| Q |
415 |
tcttataagcttactggtttcaaattct |
442 |
Q |
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| T |
41654684 |
tcttataagcttactggtctcaaattct |
41654657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 284 - 442
Target Start/End: Original strand, 43227884 - 43228042
Alignment:
| Q |
284 |
acctgcataagaagagcatccatgtcagctctaagagcgacaaaaggaggaagaccagttcctatgtaaccaataacacctgtaactgcaactggatgtt |
383 |
Q |
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|||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43227884 |
acctgcatgagaagagcatccatgtcagctctaagagcaacaaaaggaggaagaccagttcctatgtaaccaataacacctgtaactgcaactggatgtt |
43227983 |
T |
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| Q |
384 |
tatattgaacacccaactcatccaattttgttcttataagcttactggtttcaaattct |
442 |
Q |
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| T |
43227984 |
tatattgaacacccaactcatccaattttgttcttataagcttactagtctcaaattct |
43228042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 284 - 442
Target Start/End: Original strand, 43206374 - 43206532
Alignment:
| Q |
284 |
acctgcataagaagagcatccatgtcagctctaagagcgacaaaaggaggaagaccagttcctatgtaaccaataacacctgtaactgcaactggatgtt |
383 |
Q |
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||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43206374 |
acctgaataagaagagcatccatatcagctctaagagcaacaaaaggaggaagaccagttcctatgtaaccaataacacctgtaactgcaactggatgtt |
43206473 |
T |
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| Q |
384 |
tatattgaacacccaactcatccaattttgttcttataagcttactggtttcaaattct |
442 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| |
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| T |
43206474 |
tatattgaacacccaactcatccaattttgttcttataagcttactagtctcaaattct |
43206532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 284 - 441
Target Start/End: Original strand, 43224083 - 43224240
Alignment:
| Q |
284 |
acctgcataagaagagcatccatgtcagctctaagagcgacaaaaggaggaagaccagttcctatgtaaccaataacacctgtaactgcaactggatgtt |
383 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
43224083 |
acctgcatgagaagagcatccatgtcagctctaagagcgacaaaaggaggaagaccagttcctatgtaaccaataacacctgtcactgcaactggatgtt |
43224182 |
T |
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| Q |
384 |
tatattgaacacccaactcatccaattttgttcttataagcttactggtttcaaattc |
441 |
Q |
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||||||||||||| || |||||||||| ||||||||||||||||||||| |||||||| |
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| T |
43224183 |
tatattgaacacctaattcatccaattctgttcttataagcttactggtctcaaattc |
43224240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 283 - 442
Target Start/End: Complemental strand, 41650276 - 41650117
Alignment:
| Q |
283 |
tacctgcataagaagagcatccatgtcagctctaagagcgacaaaaggaggaagaccagttcctatgtaaccaataacacctgtaactgcaactggatgt |
382 |
Q |
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||||||||| |||||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
41650276 |
tacctgcatgagaagagcatccatatcagctctgagagctacaaaaggaggaagaccagttcctatgtaaccaataacacctgtcactgcaactggatgt |
41650177 |
T |
|
| Q |
383 |
ttatattgaacacccaactcatccaattttgttcttataagcttactggtttcaaattct |
442 |
Q |
| |
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|||||| | ||||| || |||||||||||||||| |||||||||||| |||| ||||||| |
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| T |
41650176 |
ttatatgggacacctaattcatccaattttgttcgtataagcttactagttttaaattct |
41650117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 15 - 82
Target Start/End: Original strand, 43213085 - 43213152
Alignment:
| Q |
15 |
tcttatgctcccactccaccaattcctgaagttaacaacaacaaaaaatcatcaacgaatttagagtg |
82 |
Q |
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| T |
43213085 |
tcttatgctcccactccaccaattcctgaagttaacaacaacaaaaaatcatcaacgaatttagagtg |
43213152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 145 - 190
Target Start/End: Original strand, 43213215 - 43213260
Alignment:
| Q |
145 |
gaagattgaacttggagtgagaaatttttcatttttctttttcatc |
190 |
Q |
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| T |
43213215 |
gaagattgaacttggagtgagaaatttttcatttttctttttcatc |
43213260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 284 - 420
Target Start/End: Original strand, 5073616 - 5073752
Alignment:
| Q |
284 |
acctgcataagaagagcatccatgtcagctctaagagcgacaaaaggaggaagaccagttcctatgtaaccaataacacctgtaactgcaactggatgtt |
383 |
Q |
| |
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||||||||| |||||||||||| |||||||| | ||| |||||||||| | |||||||||||| ||||||| ||||| || | ||||||||||| || |
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| T |
5073616 |
acctgcatagaaagagcatccatatcagctcttaaagcaacaaaaggagacaatccagttcctatgaaaccaatgacaccagtgattgcaactggatatt |
5073715 |
T |
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| Q |
384 |
tatattgaacacccaactcatccaattttgttcttat |
420 |
Q |
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|||| ||| || || | |||||||| ||||||||| |
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| T |
5073716 |
tatagggaatactcagtttatccaattctgttcttat |
5073752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 298 - 332
Target Start/End: Original strand, 31839458 - 31839492
Alignment:
| Q |
298 |
agcatccatgtcagctctaagagcgacaaaaggag |
332 |
Q |
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|||||||||||||||||||||||| |||||||||| |
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| T |
31839458 |
agcatccatgtcagctctaagagcaacaaaaggag |
31839492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 298 - 335
Target Start/End: Complemental strand, 26262888 - 26262851
Alignment:
| Q |
298 |
agcatccatgtcagctctaagagcgacaaaaggaggaa |
335 |
Q |
| |
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|||||||||||||||||||||||| ||||| ||||||| |
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| T |
26262888 |
agcatccatgtcagctctaagagcaacaaatggaggaa |
26262851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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