View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5337_high_6 (Length: 311)
Name: NF5337_high_6
Description: NF5337
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5337_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 1 - 296
Target Start/End: Complemental strand, 42929623 - 42929328
Alignment:
| Q |
1 |
agcaccaacaatatagccatgattgattttctcattgaccttcaaataccaactcaaaagctcttgaagaccttcccaatctttaacatcgtgagcttct |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42929623 |
agcaccaacaatatagccatgattgattttctcattgaccttcaaataccaactcaaaagctcttgaagaccttcccaatctttaacatcgtgagcttct |
42929524 |
T |
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| Q |
101 |
actatttcctccatagactttcgaaaatcgacataaggatctcgagattccatagataaaactacactatctttgaatggcaagctttgagtttcaccac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42929523 |
actatttcctccatagactttcgaaaatcgacataaggatctcgagattccatagataaaactacactatctttgaatggcaagctttgagtttcaccac |
42929424 |
T |
|
| Q |
201 |
ctccaattgcagcagctttattattaacctctaaaatggagttggtctcatctggctcaaagaaaaaccgatcagaagataatccacgaatcacag |
296 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42929423 |
ctccaattgcagcagctttattattaacctctaagatggagttggtctcatctggctcaaagaaaaaccgatcagaagataatccacgaatcacag |
42929328 |
T |
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Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 50463300 - 50463383
Alignment:
| Q |
1 |
agcaccaacaatatagccatgattgattttctcattgaccttcaaataccaactcaaaagctcttgaagaccttcccaatcttt |
84 |
Q |
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||||||||||||| | |||||||| |||| |||| || ||||||||||||||||||||||||| | ||| ||||||||||| |
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| T |
50463300 |
agcaccaacaataaacccatgattatttttaccattaactttcaaataccaactcaaaagctcttccaaaccatcccaatcttt |
50463383 |
T |
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