View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5337_low_1 (Length: 612)
Name: NF5337_low_1
Description: NF5337
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5337_low_1 |
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| [»] scaffold1008 (1 HSPs) |
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| [»] scaffold0874 (1 HSPs) |
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Alignment Details
Target: scaffold1008 (Bit Score: 527; Significance: 0; HSPs: 1)
Name: scaffold1008
Description:
Target: scaffold1008; HSP #1
Raw Score: 527; E-Value: 0
Query Start/End: Original strand, 1 - 594
Target Start/End: Original strand, 1944 - 2550
Alignment:
| Q |
1 |
agctataccattatgaatgtgttcaacgccaaaatttaaaatgctctgatcatgtcctaataattccttcaacttgattgtcagtaaatattgggattga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1944 |
agctataccattatgaatgtgttcaacgccaaaatttaaaatgctctgatcatgtcctaataattccttcaacttgattgtcagtaaatattgggattga |
2043 |
T |
|
| Q |
101 |
ggaaataaatattgaaagaattcaaccaaaaggtagtctctttgactaaaataatacagttaaggaaagcatgtacaacttcaacaatgttcaaaccaaa |
200 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2044 |
ggaaataaatattgaaagaattgaaccaaaaggtagtctctttgactaaaataatacagttaaggaaagcatgtacaacttcaacaatgttcaaaccaaa |
2143 |
T |
|
| Q |
201 |
gaccctacttcatttcatcaaggatagggtcacaagtaattgattctcctactaaaattgaaaggagacaggatgaagccataaaagagagagaattaaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
2144 |
gaccctacttcatttcatcaaggatagggtcacaagtaattgattctcctactaaaattgaaaggaaacaggatgaagccataaaagagagagaattaaa |
2243 |
T |
|
| Q |
301 |
ttgatccataaaagacactggtatttatcttttcaaattaaaggagcaagaatgaatttcaaaccacctcacacatcattaaattttgatattttgcttc |
400 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
2244 |
ttgatccataaaagacactggtatttatcttttcaaattaaaggagcaagaatgaatttcaaaccacctcacacattattaaattttgatattttgcttc |
2343 |
T |
|
| Q |
401 |
taaacaccaatgattctacataaagagcttgatcatccttacaactaaat-------------caactacatcaaaaaactacttttttcaacatcaata |
487 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||| | || |||||||||||||||||||||||| |||||||||||| |
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| T |
2344 |
taaactccaatgattctacataaagagcttgatcatccttacaatttcatataaaacatctaccaactacatcaaaaaactacttttatcaacatcaata |
2443 |
T |
|
| Q |
488 |
aaggcaaaaccaatagctctaaatatgcagcccgcagcaaaatgttcggcattaaaatatatacccagggcaattttgccaattgaatgaaataagagta |
587 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
2444 |
aaggcaaaaccaatagctctaaatatgcagcccgcagcaaaatgttcggcattaaaatatatacacagggcaattttgccaattgaatgaaataagagta |
2543 |
T |
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| Q |
588 |
tatgagt |
594 |
Q |
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||||||| |
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| T |
2544 |
tatgagt |
2550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0874 (Bit Score: 527; Significance: 0; HSPs: 1)
Name: scaffold0874
Description:
Target: scaffold0874; HSP #1
Raw Score: 527; E-Value: 0
Query Start/End: Original strand, 1 - 594
Target Start/End: Complemental strand, 1975 - 1369
Alignment:
| Q |
1 |
agctataccattatgaatgtgttcaacgccaaaatttaaaatgctctgatcatgtcctaataattccttcaacttgattgtcagtaaatattgggattga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1975 |
agctataccattatgaatgtgttcaacgccaaaatttaaaatgctctgatcatgtcctaataattccttcaacttgattgtcagtaaatattgggattga |
1876 |
T |
|
| Q |
101 |
ggaaataaatattgaaagaattcaaccaaaaggtagtctctttgactaaaataatacagttaaggaaagcatgtacaacttcaacaatgttcaaaccaaa |
200 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1875 |
ggaaataaatattgaaagaattgaaccaaaaggtagtctctttgactaaaataatacagttaaggaaagcatgtacaacttcaacaatgttcaaaccaaa |
1776 |
T |
|
| Q |
201 |
gaccctacttcatttcatcaaggatagggtcacaagtaattgattctcctactaaaattgaaaggagacaggatgaagccataaaagagagagaattaaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
1775 |
gaccctacttcatttcatcaaggatagggtcacaagtaattgattctcctactaaaattgaaaggaaacaggatgaagccataaaagagagagaattaaa |
1676 |
T |
|
| Q |
301 |
ttgatccataaaagacactggtatttatcttttcaaattaaaggagcaagaatgaatttcaaaccacctcacacatcattaaattttgatattttgcttc |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
1675 |
ttgatccataaaagacactggtatttatcttttcaaattaaaggagcaagaatgaatttcaaaccacctcacacattattaaattttgatattttgcttc |
1576 |
T |
|
| Q |
401 |
taaacaccaatgattctacataaagagcttgatcatccttacaactaaat-------------caactacatcaaaaaactacttttttcaacatcaata |
487 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||||||||| | || |||||||||||||||||||||||| |||||||||||| |
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| T |
1575 |
taaactccaatgattctacataaagagcttgatcatccttacaatttcatataaaacatctaccaactacatcaaaaaactacttttatcaacatcaata |
1476 |
T |
|
| Q |
488 |
aaggcaaaaccaatagctctaaatatgcagcccgcagcaaaatgttcggcattaaaatatatacccagggcaattttgccaattgaatgaaataagagta |
587 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
1475 |
aaggcaaaaccaatagctctaaatatgcagcccgcagcaaaatgttcggcattaaaatatatacacagggcaattttgccaattgaatgaaataagagta |
1376 |
T |
|
| Q |
588 |
tatgagt |
594 |
Q |
| |
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||||||| |
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| T |
1375 |
tatgagt |
1369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 348; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 76 - 594
Target Start/End: Original strand, 2330957 - 2331487
Alignment:
| Q |
76 |
gattgtcagtaaatattgggattgaggaaataaatattgaaagaattcaaccaaaaggtagtctctttgactaaaataatacagttaaggaaagcatgta |
175 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||| ||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
2330957 |
gattgtcagtaaatattgggattgaggaaataaatatcgaaaggattgaaccaaaaggtggtctctttgactaaaataatacagttaaggaaagcatgta |
2331056 |
T |
|
| Q |
176 |
caacttcaacaatgttcaaaccaaagaccctacttcatttcatcaaggatagggtcacaagtaattgattctcctactaaaattgaaaggagacaggatg |
275 |
Q |
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|||||||||||||| | ||||||||||| || |||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| |||||||| |
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| T |
2331057 |
caacttcaacaatgcacgaaccaaagacc-tagttcatttcatcaaggataaggtcacaagtaattgattctactactaaaattgaaaggaaacaggatg |
2331155 |
T |
|
| Q |
276 |
aagccataaaagagagagaattaaattgatccataaaagacactggtatttatcttttcaaattaaaggagcaagaatgaatttcaaaccacctcacaca |
375 |
Q |
| |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
2331156 |
aaaccataaaagagagagaattaaattgatccataaaagacactggtatttatcttttcaaattaaaggagcaaggatgaatttcaaaccacctcacaca |
2331255 |
T |
|
| Q |
376 |
tcattaaattttgatattttgcttctaaacaccaatgattctacataaagagcttgatcatccttacaactaaat-------------caactacatcaa |
462 |
Q |
| |
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||| || | ||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||| | || |||||||||| | |
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| T |
2331256 |
tcactagactttgatattttgcttctaaactccaatgattctacataaagagcttgattatccttacaatttcatataaaacatctaccaactacatcga |
2331355 |
T |
|
| Q |
463 |
aaaactacttttttcaacatcaataaaggcaaaaccaatagctctaaatatgcagcccgcagcaaaatgttcggcattaaaatatatacccagggcaatt |
562 |
Q |
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|||||||||||| ||||| ||| |||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| |||| |
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| T |
2331356 |
aaaactacttttatcaacgtcattaaaagcaaaaccaatagctctaaatatgaagcccgcagcaaaatgttcggcattaaaatatatacagagggaaatt |
2331455 |
T |
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| Q |
563 |
ttgccaattgaatgaaataagagtatatgagt |
594 |
Q |
| |
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| ||||||||| ||||||||| |||||||||| |
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| T |
2331456 |
tagccaattgagtgaaataagggtatatgagt |
2331487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 48 - 108
Target Start/End: Original strand, 2330896 - 2330956
Alignment:
| Q |
48 |
gatcatgtcctaataattccttcaacttgattgtcagtaaatattgggattgaggaaataa |
108 |
Q |
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|||||| |||| | |||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
2330896 |
gatcatatcctgacaattccttcaacttgactgtcagtaaatattgggattgaggaaataa |
2330956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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