View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5337_low_2 (Length: 484)
Name: NF5337_low_2
Description: NF5337
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5337_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 230 - 473
Target Start/End: Complemental strand, 30690933 - 30690689
Alignment:
| Q |
230 |
ctgttttatgtcgtattttttcgttttgtctggtttagataaggannnnnnnnn-ccaattattgtacatatcttatgcacgttatgccaatgtatggat |
328 |
Q |
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| T |
30690933 |
ctgttttatgttgtattttttcgttttgtctggtttagataaggattttttttttccaattattgtacatatcttatgcacgttatgccaatgtatggat |
30690834 |
T |
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| Q |
329 |
gtctgccttctcacttacttttcggtttcattgtagtacataattgaattgtaggaaatactcaatacatgcatgggattcttcttgtattttacattaa |
428 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
30690833 |
gtctgccttctcacttacttttcggtttcactgtagtacataattgaattgtaggaaatactcaatacatgcatgggattattcttgtattttacattaa |
30690734 |
T |
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| Q |
429 |
gggtggacggaaaatagtacgtttcctcgtgagtcctgatgatgt |
473 |
Q |
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| T |
30690733 |
gggtggacggaaaatagtacatttcctcgtgagtcctgatgatgt |
30690689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 18 - 197
Target Start/End: Complemental strand, 30691139 - 30690960
Alignment:
| Q |
18 |
gtatcagcccatatggtactgatacatatttgcgttatatgctccgcaaaagattacaggagtaagattcatgattccttttttcctttctgtgataact |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
30691139 |
gtatcagcccatatggtactgatacatatttgcgttatatgctccgcaaaagattacaggagtaagattcaagattccttttttcctttctgtgataact |
30691040 |
T |
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| Q |
118 |
ctgattatggtgtatgtatatcattccttgtctcttataggttagagttaggaaagtttcatttaatgttttatgttgta |
197 |
Q |
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| T |
30691039 |
ctgattatggtgtatgtatatcattccttgtctcttatatgttagagttaggaaagtttcatttaatgttttatgttgta |
30690960 |
T |
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