View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5337_low_4 (Length: 344)
Name: NF5337_low_4
Description: NF5337
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5337_low_4 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 289; Significance: 1e-162; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 19 - 332
Target Start/End: Complemental strand, 30232493 - 30232178
Alignment:
| Q |
19 |
aggctgtaccaatgaaatagttcaaaagagcatt--aaggctgataaactaacagaggttttcacatcgtttcttaaaaatgttttggtttacttcctct |
116 |
Q |
| |
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|||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
30232493 |
aggctgtaccaatgaaatagttcaaaagagcaattcaaggctgataaactaacagaggttttcacatcgtttcttaaaaatgttttggtttacttgctct |
30232394 |
T |
|
| Q |
117 |
aaaggagaaagtgtgtaaataaatttttggcaaagttacatgtgtacctgatgtgggattgaatcttgttcctagcaaagaaaatgaaagaaacaaccac |
216 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30232393 |
aaaggagaaactgtgtaaataaatttttggcaaagttacatgtgtacctgatgtgggattgaatcttgttcctagcaaagaaaatgaaagaaacaaccac |
30232294 |
T |
|
| Q |
217 |
aacaataaaattacctaatttttgttccgcggttcctgctgaagtagacgccttagtttcacttgtgctatcagacttaagtcttttaattctatttaaa |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
30232293 |
aacaataaaattacctaatttttgttccgcggttcctgctgaagtagacgccttagtttcactggtgctatcagacttaagtcttttaattctatttaaa |
30232194 |
T |
|
| Q |
317 |
tttgtaagcagagtga |
332 |
Q |
| |
|
|||||||||||||||| |
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|
| T |
30232193 |
tttgtaagcagagtga |
30232178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 63 - 322
Target Start/End: Complemental strand, 30229722 - 30229473
Alignment:
| Q |
63 |
aactaacagaggttttcacatcgtttcttaaaaatgttttggtttacttcctctaaaggagaaagtgtgtaaataaatttttggcaaagttacatgtgta |
162 |
Q |
| |
|
||||||||||| || |||||| ||||||||||||| ||| |||||||| |||||||||||||| ||||| |||||| ||||||||| |||||||| | |
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| T |
30229722 |
aactaacagagattatcacattatttcttaaaaatggtttagtttacttgctctaaaggagaaactgtgtgaataaacttttggcaat-ttacatgt--a |
30229626 |
T |
|
| Q |
163 |
cctgatgtgggattgaatcttgttcctagcaaagaaaatgaaagaaacaaccacaacaataaaattacctaatttttgttccgcggttcctgctgaagta |
262 |
Q |
| |
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| | ||||||||||| ||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| |
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| T |
30229625 |
c-------gagattgaatctttttcctagaaaagaaaatgaaagaaacaaccacaacgataaaattacctaatttttgttccgcggttcctgatgaagta |
30229533 |
T |
|
| Q |
263 |
gacgccttagtttcacttgtgctatcagacttaagtcttttaattctatttaaatttgta |
322 |
Q |
| |
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||||||| ||||||||| ||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
30229532 |
gacgcctcagtttcactggtgctatcagacttaagtcttttaattctgtttaaatttgta |
30229473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 195; Significance: 1e-106; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 85 - 322
Target Start/End: Complemental strand, 26987356 - 26987121
Alignment:
| Q |
85 |
gtttcttaaaaatgttttggtttacttcctctaaaggagaaagtgtgtaaataaatttttggcaaagttacatgtgtacctgatgtgggattgaatcttg |
184 |
Q |
| |
|
||||||||||||||||||||||||||| |||| ||||||||| ||||| ||||||||||||||||||||| |||| || |||||||||||||||||||| |
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|
| T |
26987356 |
gtttcttaaaaatgttttggtttacttgctcttaaggagaaactgtgtgaataaatttttggcaaagttatatgt--acttgatgtgggattgaatcttg |
26987259 |
T |
|
| Q |
185 |
ttcctagcaaagaaaatgaaagaaacaaccacaacaataaaattacctaatttttgttccgcggttcctgctgaagtagacgccttagtttcacttgtgc |
284 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
26987258 |
ttcctagcaaagaaaatgaaagaaacaactacaacaataaaattacctaatttttgttccgcggttcctgctgaagtagacgccttagtttcactggtgc |
26987159 |
T |
|
| Q |
285 |
tatcagacttaagtcttttaattctatttaaatttgta |
322 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
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|
| T |
26987158 |
tatcagacttaagtcttttaattctatttaaatttgta |
26987121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 21 - 322
Target Start/End: Original strand, 27077875 - 27078176
Alignment:
| Q |
21 |
gctgtaccaatgaaatagttcaaaagagcattaaggctgataaactaacagaggttttcacatcgtttcttaaaaatgttttggttt----acttcctct |
116 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| ||||||||||||||||| |||| |||| |
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|
| T |
27077875 |
gctgtaccaacgaaatagttcaaaagagcattaaggcagataaactaacagagattttcacatcgtttcctaaaaatgttttggtttgtttacttgctct |
27077974 |
T |
|
| Q |
117 |
aaaggagaaagtgtgtaaataaatttttggcaaagttacatgtgtacctgatgtgggattgaatcttgttcctagcaaagaaaatgaaagaaacaaccac |
216 |
Q |
| |
|
||||||||| ||||| |||||||||||||||| |||||||| |||||||| |||||||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
27077975 |
aaaggagaac-tgtgtgaataaatttttggcaat-ttacatgt--acctgatgcgggattgaatctcgttcctagcaaagaaaatgaaagaaacaaccac |
27078070 |
T |
|
| Q |
217 |
aacaataaaattacctaatttttgttccgcggttcctgctgaagtagacgccttagtttcacttgtgctatcagacttaagtcttttaattctatttaaa |
316 |
Q |
| |
|
||| ||||| |||||||||||||||||||||||||||||||||||||||| || ||||||||| ||||||||||||||||||||||||||||| || ||| |
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| T |
27078071 |
aacgataaagttacctaatttttgttccgcggttcctgctgaagtagacgtctcagtttcactggtgctatcagacttaagtcttttaattctgttcaaa |
27078170 |
T |
|
| Q |
317 |
tttgta |
322 |
Q |
| |
|
|||||| |
|
|
| T |
27078171 |
tttgta |
27078176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 224 - 322
Target Start/End: Complemental strand, 27026820 - 27026722
Alignment:
| Q |
224 |
aaattacctaatttttgttccgcggttcctgctgaagtagacgccttagtttcacttgtgctatcagacttaagtcttttaattctatttaaatttgta |
322 |
Q |
| |
|
||||||||| |||||||||||| ||||||| ||||||||||||||| |||| |||| ||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
27026820 |
aaattacctgatttttgttccgtggttccttctgaagtagacgcctcagttacactggtgctatcagacttaagtcttttaattctgcttaaatttgta |
27026722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 29 - 279
Target Start/End: Original strand, 27100207 - 27100456
Alignment:
| Q |
29 |
aatgaaatagttcaaaagagcattaaggctgataaactaacagaggttttcacatcgtttcttaaaaatgttttggtttacttcctctaaaggagaaagt |
128 |
Q |
| |
|
||||||| | || ||||||| ||| |||| |||||||||||||| || |||||| |||||||||||||||||||||| ||| | |||||||||||| | |
|
|
| T |
27100207 |
aatgaaaaacttaaaaagagaatttaggcagataaactaacagaaattatcacataatttcttaaaaatgttttggtttgcttgcgctaaaggagaaact |
27100306 |
T |
|
| Q |
129 |
gtgta--aataaatttttggcaaagttacatgtgtacctgatgtgggattgaatcttgttcctagcaaagaaaatgaaagaaacaaccacaacaat-aaa |
225 |
Q |
| |
|
|| || |||||| |||| | ||| ||||| || || || | |||||| || ||||||||||||||||||||||||| || |||| | ||| || || |
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|
| T |
27100307 |
gtatatgaataaaatttt-gaaaatttaca--tgcacatgtggcgggattaaaccttgttcctagcaaagaaaatgaaa-aagcaactaaaacgatcgaa |
27100402 |
T |
|
| Q |
226 |
attacctaatttttgttccgcggttcctgctgaagtagacgccttagtttcact |
279 |
Q |
| |
|
| |||||| |||||||||| |||||||| ||||||||||||||||| ||||||| |
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|
| T |
27100403 |
agtacctagtttttgttccacggttccttctgaagtagacgccttattttcact |
27100456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 19 - 66
Target Start/End: Complemental strand, 26987404 - 26987357
Alignment:
| Q |
19 |
aggctgtaccaatgaaatagttcaaaagagcattaaggctgataaact |
66 |
Q |
| |
|
||||||||||||||||||||| ||||| ||||||||||| || ||||| |
|
|
| T |
26987404 |
aggctgtaccaatgaaatagtgcaaaaaagcattaaggcagagaaact |
26987357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 78 - 146
Target Start/End: Complemental strand, 27026912 - 27026842
Alignment:
| Q |
78 |
tcacatcgtttcttaaaaatgttttggtttacttcctctaaaggagaaagtgtgta--aataaatttttgg |
146 |
Q |
| |
|
||||||| |||||| |||||| |||| ||||||| ||||||||| |||| |||||| ||||||||||||| |
|
|
| T |
27026912 |
tcacatcctttcttcaaaatggtttgctttacttgctctaaaggtgaaactgtgtataaataaatttttgg |
27026842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 85 - 321
Target Start/End: Complemental strand, 34689463 - 34689229
Alignment:
| Q |
85 |
gtttcttaaaaatgttttggtttacttcctctaaaggagaaagtgtgtaaataaatttttggcaaagttacatgtgtacctgatgtgggattgaatcttg |
184 |
Q |
| |
|
||||||||||||||||||||||||||| |||| ||||||||| ||||| ||||||||||||||||||||| |||| || ||||||||||| |||||||| |
|
|
| T |
34689463 |
gtttcttaaaaatgttttggtttacttgctcttaaggagaaactgtgtgaataaatttttggcaaagttagatgt--acttgatgtgggatcgaatcttg |
34689366 |
T |
|
| Q |
185 |
ttcctagcaaagaaaatgaaagaaacaaccacaacaataaaattacctaatttttgttccgcggttcctgctgaagtagacgccttagtttcacttgtgc |
284 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
34689365 |
ttcctagcaaagaaaatgaaagaaacaacaacaacaataaaattacctaatttttgttccgcggttcctgctgaagtagacgccttagtttcactggtgc |
34689266 |
T |
|
| Q |
285 |
tatcagacttaagtcttttaattctatttaaatttgt |
321 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34689265 |
tatcagacttaagtcttttaattctatttaaatttgt |
34689229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 19 - 66
Target Start/End: Complemental strand, 34689511 - 34689464
Alignment:
| Q |
19 |
aggctgtaccaatgaaatagttcaaaagagcattaaggctgataaact |
66 |
Q |
| |
|
||||||||||||||||||||| ||||| ||||||||||| || ||||| |
|
|
| T |
34689511 |
aggctgtaccaatgaaatagtgcaaaaaagcattaaggcagagaaact |
34689464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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