View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5337_low_8 (Length: 307)
Name: NF5337_low_8
Description: NF5337
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5337_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 258; Significance: 1e-144; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 13 - 299
Target Start/End: Original strand, 38997792 - 38998078
Alignment:
| Q |
13 |
tgatatgaagacatcactttttgttccaacaccagataaatacagcaaagcatgcacaaaatggattggctatgaaaaattggttgtgccttacttcttt |
112 |
Q |
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| T |
38997792 |
tgatatgaagacatcactttttgttccaacaccagataaatacagcaaagcatgcacaaaatggattggctatgaaaaattggttgtgccttacttcttt |
38997891 |
T |
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| Q |
113 |
cacaatctgcagtcgtttctcataaggaaaattcctgctgtactcatggattcctatatgctacgnnnnnnnctttaccggcgtgaaaaaggactcatcg |
212 |
Q |
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| T |
38997892 |
cacaatctgcagtcgtttctcataaggaaaattcctgatgtactcatggattcctatatgctacgtttttttctttaccggcgtgaaaaaggactcatcg |
38997991 |
T |
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| Q |
213 |
acgactcccaaatcaaaggattagaagcatcttgtaattctgagacaaatcaacattagcatctatgtaaaaataagtttgatgatg |
299 |
Q |
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| T |
38997992 |
acgactcccaaatcaaaggattagaagcatcttgtaattctgagacaaatcaacattagcttctatgtaaaaataagtttgatgatg |
38998078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 24 - 269
Target Start/End: Original strand, 39002464 - 39002709
Alignment:
| Q |
24 |
catcactttttgttccaacaccagataaatacagcaaagcatgcacaaaatggattggctatgaaaaattggttgtgccttacttctttcacaatctgca |
123 |
Q |
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| T |
39002464 |
catcactttttgttccaacaccagataaatacagcaaagcatgcacaaaatggattggctatgaaaaattggttgtaccttacctctttcacaatctgca |
39002563 |
T |
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| Q |
124 |
gtcgtttctcataaggaaaattcctgctgtactcatggattcctatatgctacgnnnnnnnctttaccggcgtgaaaaaggactcatcgacgactcccaa |
223 |
Q |
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| T |
39002564 |
gtcatttctcataaggaaaattcctgatgtattcttggattcctacatgttgcgtaatttgctttacatgcgtaaaagagggctcatcaaggactcccaa |
39002663 |
T |
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| Q |
224 |
atcaaaggattagaagcatcttgtaattctgagacaaatcaacatt |
269 |
Q |
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| T |
39002664 |
atcaaaggatcaaaagcatctagtaattctaaaacaaattaacatt |
39002709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 206 - 269
Target Start/End: Complemental strand, 21839489 - 21839426
Alignment:
| Q |
206 |
ctcatcgacgactcccaaatcaaaggattagaagcatcttgtaattctgagacaaatcaacatt |
269 |
Q |
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|||||| | |||||||||||||||| || |||||||||| | |||||||| ||||||||||||| |
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| T |
21839489 |
ctcatcaaggactcccaaatcaaagtatcagaagcatctagcaattctgaaacaaatcaacatt |
21839426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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