View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5338_high_3 (Length: 235)
Name: NF5338_high_3
Description: NF5338
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5338_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 17 - 222
Target Start/End: Original strand, 38285339 - 38285545
Alignment:
| Q |
17 |
agatttttctacagctgagaccgaaaaaatagttaatacaagaaaaatctatgattagatgaacttatatattcaactaattgagnnnnnnnn-aagata |
115 |
Q |
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| T |
38285339 |
agatttttctacagctgagaccgaaaaaatagttaatacaagaaaaatctatgattagatgaacttatatattcaactaattgagtttttttttaagata |
38285438 |
T |
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| Q |
116 |
ttcaactaattgagttaaattctaaatgtttggcgaattatcccataaagtcaaataaagaacacttgaaagtcgataataaattgtgtaggacaaatga |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38285439 |
ttcaactaattgagttaaattctaaatgtttggcgaattatcccataaagtcaaataaagaacacttgaaagtcgataataaattgtgtaggacaaatga |
38285538 |
T |
|
| Q |
216 |
gtataat |
222 |
Q |
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||||||| |
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| T |
38285539 |
gtataat |
38285545 |
T |
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