View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5338_low_2 (Length: 593)
Name: NF5338_low_2
Description: NF5338
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5338_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 519; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 519; E-Value: 0
Query Start/End: Original strand, 1 - 579
Target Start/End: Complemental strand, 179650 - 179072
Alignment:
| Q |
1 |
cactatccttaacattaagattattttgttggtctaacagtaaaaacggaataaactattttagagaagacatataattgagattctaaactatttttgt |
100 |
Q |
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||||||||||||| ||| ||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
179650 |
cactatccttaacgttaggattattttgttggtgtaacagtaaaaatggaataaactattttagagaagacatataactgagattctaaactatttttgt |
179551 |
T |
|
| Q |
101 |
taggttataacatgattaatgaaacatataattgcattgagttgttgaagtaagcaatcaccctagaccttcttgatgattgcttttgacatatactaaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
179550 |
taggttataacatgattaatgaaacatataattgcattgagtttttgaagtaagcaatcaccctagaccttcttgatgattgcttttgacatatactaaa |
179451 |
T |
|
| Q |
201 |
tttaagactatattctaaaatatctttagtagtacggcttacatgattttagtttctctatattttccaaagcatgcacactataagattttagttttgc |
300 |
Q |
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|||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
179450 |
tttaagactatattctaaaatatctttagtagcacgggttacatgattttagtttctccatattttccaaagcatgcacactataagattttagttttgc |
179351 |
T |
|
| Q |
301 |
aaaaaacttttttcatatgagatggcacacactatagaaaattgatgatcgtgcaaattttcattcaagagaatgatgaacatagaaattgttcaacaag |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
179350 |
caaaaacttttttcatatgagatggcacacactatagaaaattgatgatcgtgcaaattttcattcaagaggatgatgaacatagaaattgttcaacaag |
179251 |
T |
|
| Q |
401 |
aaatcacaagcggaagaaaatttacatagagattattgaaggatgctgaattatctattaatgataagtgattttagcttggtttttgttgtagtgaatc |
500 |
Q |
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| T |
179250 |
aaatcacaagcggaagaaaattgacatagagattattgaaggatactgaattatctattaatgataagtgattttagcttgttttttgttgtagtgaatc |
179151 |
T |
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| Q |
501 |
atatgattggagtggttacttagattcaagttgttggaacactgttgttccagcacaagtgaaattgtaagagtaaatt |
579 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
179150 |
atatgattggagtggttacttagattcaagttgttggaaccctgttgttccagcacaagtgaaattgtaagagtaaatt |
179072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 20625220 - 20625262
Alignment:
| Q |
1 |
cactatccttaacattaagattattttgttggtctaacagtaa |
43 |
Q |
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| T |
20625220 |
cactatccttaacattaggattattttgttggtctaacagtaa |
20625262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 35920087 - 35920125
Alignment:
| Q |
1 |
cactatccttaacattaagattattttgttggtctaaca |
39 |
Q |
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| T |
35920087 |
cactatccttaacattaggattattttgttggtctaaca |
35920125 |
T |
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