View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5338_low_3 (Length: 542)
Name: NF5338_low_3
Description: NF5338
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5338_low_3 |
 | |
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Alignment Details
Target: chr8 (Bit Score: 473; Significance: 0; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 473; E-Value: 0
Query Start/End: Original strand, 9 - 521
Target Start/End: Complemental strand, 38609483 - 38608971
Alignment:
| Q |
9 |
agcacagagccacaaactaaacaacaatgtgagttaactacaaattcagagtttcactttagtatatgaacaacagtgtaactgtaaacttattaactac |
108 |
Q |
| |
|
|||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
38609483 |
agcacaaagccacaaactaaacaacaatgcgagttaactacaaattcagagtttcactttagtacatgaacaacagtgtaactgtaaacttattaactac |
38609384 |
T |
|
| Q |
109 |
aaatttaatagagattcacttcagcagagaaagaactaaaccgcaatcttcatcatcatcgaagcatcgcactcacaggccatggtgatcttcaatctca |
208 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38609383 |
aaatttcatagagattcacttcagcagagaaagaactaaaccgcaatcttcatcatcatcgaagcatcgcactcacaggccatggtgatcttcaatctca |
38609284 |
T |
|
| Q |
209 |
accattggcttgacctcaggcatgggagacacacctgctgtagtagtgactccagcagcacaaccaccacgtccatcaagagcagagcaggtttcttccg |
308 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38609283 |
accattggcttgacctgaggcatgggagacacacctgctgtagtagtgacaccagcagcacaaccaccacgtccatcaagagcagagcaggtttcttccg |
38609184 |
T |
|
| Q |
309 |
tcgcctgacctggagaatctaataaagtagatgatccggctctaacacctgctccttccgacgctccttcacctcctaatatagtatcataagcagccgc |
408 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38609183 |
tcgcctgacctggagaatctaataaagttgatgctccggctccaacacctgctccttccgacgctccttcacctcctaatatagtatcataagcagccgc |
38609084 |
T |
|
| Q |
409 |
aataggattgatatgcggaaaaggcaaatacacactgtgcacaactatcttcacattgcggatgacgtcagcaaccttaactctcacatagttaatcctc |
508 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38609083 |
aataggattgatatgcggaaaaggcaaatacacactgtgcacaactatcttcacattgcggatgacgtcagcaaccttaactctcacatagttaatcctc |
38608984 |
T |
|
| Q |
509 |
attggcgctgatg |
521 |
Q |
| |
|
|| |||||||||| |
|
|
| T |
38608983 |
atcggcgctgatg |
38608971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 473; E-Value: 0
Query Start/End: Original strand, 9 - 521
Target Start/End: Complemental strand, 38794266 - 38793754
Alignment:
| Q |
9 |
agcacagagccacaaactaaacaacaatgtgagttaactacaaattcagagtttcactttagtatatgaacaacagtgtaactgtaaacttattaactac |
108 |
Q |
| |
|
|||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
38794266 |
agcacaaagccacaaactaaacaacaatgcgagttaactacaaattcagagtttcactttagtacatgaacaacagtgtaactgtaaacttattaactac |
38794167 |
T |
|
| Q |
109 |
aaatttaatagagattcacttcagcagagaaagaactaaaccgcaatcttcatcatcatcgaagcatcgcactcacaggccatggtgatcttcaatctca |
208 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38794166 |
aaatttcatagagattcacttcagcagagaaagaactaaaccgcaatcttcatcatcatcgaagcatcgcactcacaggccatggtgatcttcaatctca |
38794067 |
T |
|
| Q |
209 |
accattggcttgacctcaggcatgggagacacacctgctgtagtagtgactccagcagcacaaccaccacgtccatcaagagcagagcaggtttcttccg |
308 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38794066 |
accattggcttgacctgaggcatgggagacacacctgctgtagtagtgacaccagcagcacaaccaccacgtccatcaagagcagagcaggtttcttccg |
38793967 |
T |
|
| Q |
309 |
tcgcctgacctggagaatctaataaagtagatgatccggctctaacacctgctccttccgacgctccttcacctcctaatatagtatcataagcagccgc |
408 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38793966 |
tcgcctgacctggagaatctaataaagttgatgctccggctccaacacctgctccttccgacgctccttcacctcctaatatagtatcataagcagccgc |
38793867 |
T |
|
| Q |
409 |
aataggattgatatgcggaaaaggcaaatacacactgtgcacaactatcttcacattgcggatgacgtcagcaaccttaactctcacatagttaatcctc |
508 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38793866 |
aataggattgatatgcggaaaaggcaaatacacactgtgcacaactatcttcacattgcggatgacgtcagcaaccttaactctcacatagttaatcctc |
38793767 |
T |
|
| Q |
509 |
attggcgctgatg |
521 |
Q |
| |
|
|| |||||||||| |
|
|
| T |
38793766 |
atcggcgctgatg |
38793754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 91 - 521
Target Start/End: Original strand, 38120719 - 38121152
Alignment:
| Q |
91 |
tgtaaacttattaactacaaatttaatagagattcacttcagcagagaaagaactaaaccgcaatcttcat---catcatcgaagcatcgcactcacagg |
187 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
38120719 |
tgtaaacttattaactacaaatttcatagagattcacttcagcagagaaagaactaaaccgcaatcttcatcatcatcatcgaagcatcgcactcacagg |
38120818 |
T |
|
| Q |
188 |
ccatggtgatcttcaatctcaaccattggcttgacctcaggcatgggagacacacctgctgtagtagtgactccagcagcacaaccaccacgtccatcaa |
287 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| |
|
|
| T |
38120819 |
ccatggtgatcttcaatctcaaccattggcttgacctgaggcatgggagacacacctgctgcagtagtgacatcagcagcacaaccaccacgtccatcag |
38120918 |
T |
|
| Q |
288 |
gagcagagcaggtttcttccgtcgcctgacctggagaatctaataaagtagatgatccggctctaacacctgctccttccgacgctccttcacctcctaa |
387 |
Q |
| |
|
|||||||||||||||||||||| |||||||| | ||||||| ||| ||||| | || ||||| ||||| ||||||||||| ||||||||||||||||| |
|
|
| T |
38120919 |
gagcagagcaggtttcttccgtggcctgaccagcagaatctgatacagtagcagctctggctccgacacccgctccttccgatgctccttcacctcctaa |
38121018 |
T |
|
| Q |
388 |
tatagtatcataagcagccgcaataggattgatatgcggaaaaggcaaatacacactgtgcacaactatcttcacattgcggatgacgtcagcaacctta |
487 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
38121019 |
gatagtatcataagcagccgcaataggattgatatgcggaaaaggcaaatacacgctgtgcacaacaatcttcacattgcggatgacgtcagcaacctta |
38121118 |
T |
|
| Q |
488 |
actctcacatagttaatcctcattggcgctgatg |
521 |
Q |
| |
|
||||||||||||||||||||||| |||||||||| |
|
|
| T |
38121119 |
actctcacatagttaatcctcatcggcgctgatg |
38121152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 136 - 246
Target Start/End: Complemental strand, 34592957 - 34592844
Alignment:
| Q |
136 |
agaaagaactaaaccgcaatcttcatcatcatc---gaagcatcgcactcacaggccatggtgatcttcaatctcaaccattggcttgacctcaggcatg |
232 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| ||||| ||||| | |
|
|
| T |
34592957 |
agaaagaagtaaaccgcaatcttcatcatcatcattgaagcatcacactcacaggccatggtgatcttcaatctcaaccattggcctgacccgaggcacg |
34592858 |
T |
|
| Q |
233 |
ggagacacacctgc |
246 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
34592857 |
ggagacacacctgc |
34592844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 9 - 68
Target Start/End: Complemental strand, 34593029 - 34592970
Alignment:
| Q |
9 |
agcacagagccacaaactaaacaacaatgtgagttaactacaaattcagagtttcacttt |
68 |
Q |
| |
|
|||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
34593029 |
agcacaaagccacaaactaaacaacaatgcaagttaactacaaattcagagtttcacttt |
34592970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 102 - 150
Target Start/End: Complemental strand, 38287498 - 38287450
Alignment:
| Q |
102 |
taactacaaatttaatagagattcacttcagcagagaaagaactaaacc |
150 |
Q |
| |
|
||||||||| ||| |||||| |||||||||||||| |||||| |||||| |
|
|
| T |
38287498 |
taactacaagtttcatagagtttcacttcagcagaaaaagaagtaaacc |
38287450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 31 - 67
Target Start/End: Complemental strand, 38609538 - 38609502
Alignment:
| Q |
31 |
aacaatgtgagttaactacaaattcagagtttcactt |
67 |
Q |
| |
|
|||||||||| ||||||||||||||| |||||||||| |
|
|
| T |
38609538 |
aacaatgtgaattaactacaaattcaaagtttcactt |
38609502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 31 - 67
Target Start/End: Complemental strand, 38794321 - 38794285
Alignment:
| Q |
31 |
aacaatgtgagttaactacaaattcagagtttcactt |
67 |
Q |
| |
|
|||||||||| ||||||||||||||| |||||||||| |
|
|
| T |
38794321 |
aacaatgtgaattaactacaaattcaaagtttcactt |
38794285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 260; Significance: 1e-144; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 260; E-Value: 1e-144
Query Start/End: Original strand, 91 - 510
Target Start/End: Original strand, 28730296 - 28730715
Alignment:
| Q |
91 |
tgtaaacttattaactacaaatttaatagagattcacttcagcagagaaagaactaaaccgcaatcttcatcatcatcgaagcatcgcactcacaggcca |
190 |
Q |
| |
|
|||||||||||||||||||||||| ||| || || |||||||||||||||||| |||| |||||||||| |||| ||| || |||| ||||||||||||| |
|
|
| T |
28730296 |
tgtaaacttattaactacaaatttcatatagttttacttcagcagagaaagaagtaaatcgcaatcttcgtcatgatcaaaccatcacactcacaggcca |
28730395 |
T |
|
| Q |
191 |
tggtgatcttcaatctcaaccattggcttgacctcaggcatgggagacacacctgctgtagtagtgactccagcagcacaaccaccacgtccatcaagag |
290 |
Q |
| |
|
||||||||||||||||||| ||||||| |||||| |||||||||||||||||||| || || |||||| |||||||||| |||||||| |||||||||| |
|
|
| T |
28730396 |
tggtgatcttcaatctcaaacattggcctgacctgaggcatgggagacacacctgttgcagcagtgacatcagcagcacagccaccacgcccatcaagag |
28730495 |
T |
|
| Q |
291 |
cagagcaggtttcttccgtcgcctgacctggagaatctaataaagtagatgatccggctctaacacctgctccttccgacgctccttcacctcctaatat |
390 |
Q |
| |
|
|||||||||||||||| ||||||||||| | ||||||| ||| ||||| | || ||||| ||||||||||||||||| ||||||||||||||||| || |
|
|
| T |
28730496 |
cagagcaggtttcttcagtcgcctgaccagcagaatctgatacagtagcagctctggctccgacacctgctccttccgatgctccttcacctcctaagat |
28730595 |
T |
|
| Q |
391 |
agtatcataagcagccgcaataggattgatatgcggaaaaggcaaatacacactgtgcacaactatcttcacattgcggatgacgtcagcaaccttaact |
490 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| || |
|
|
| T |
28730596 |
agtatcataagcatccgcaataggattgatatgcggaaaaggcaaatacacactatgcacaactatcttcacattacggatgacgtcagcaaccttcacc |
28730695 |
T |
|
| Q |
491 |
ctcacatagttaatcctcat |
510 |
Q |
| |
|
|| ||||||||||||||||| |
|
|
| T |
28730696 |
ctaacatagttaatcctcat |
28730715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 8 - 204
Target Start/End: Complemental strand, 33078658 - 33078483
Alignment:
| Q |
8 |
gagcacagagccacaaactaaacaacaatgtgagttaactacaaattcagagtttcactttagtatatgaacaacagtgtaactgtaaacttattaacta |
107 |
Q |
| |
|
||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| |||||||||||| |||||||||||||||| |
|
|
| T |
33078658 |
gagcacaaagccacaaactaaacaacaatgcgagttaactacaaattcagagtttcacttttgtacatgaacaacagt------gtaaacttattaacta |
33078565 |
T |
|
| Q |
108 |
caaatttaatagagattcacttcagcagagaaagaactaaaccgcaatcttcatcatcatc---gaagcatcgcactcacaggccatggtgatcttcaat |
204 |
Q |
| |
|
||||||| ||||||||||| |||||||| ||||||||||||||| ||||||||||| |||||| ||||||||||||||||| |
|
|
| T |
33078564 |
caaattt------------------cagagaaagaagtaaaccgcgatcttcatcatcatcattgaagcatcgcagtcacagcccatggtgatcttcaat |
33078483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 412 - 475
Target Start/End: Original strand, 18224363 - 18224426
Alignment:
| Q |
412 |
aggattgatatgcggaaaaggcaaatacacactgtgcacaactatcttcacattgcggatgacg |
475 |
Q |
| |
|
|||||| ||||| ||||| ||||| |||||||||||||| || ||||| || |||||||||||| |
|
|
| T |
18224363 |
aggattaatatgtggaaatggcaagtacacactgtgcacgacgatcttgacgttgcggatgacg |
18224426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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