View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5339-Insertion-2 (Length: 739)
Name: NF5339-Insertion-2
Description: NF5339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5339-Insertion-2 |
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| [»] chr8 (6 HSPs) |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 664; Significance: 0; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 664; E-Value: 0
Query Start/End: Original strand, 7 - 739
Target Start/End: Original strand, 43822620 - 43823346
Alignment:
| Q |
7 |
agattcaacagctgatctgtagccactgtaaactgggtcgtcagcagcagcttggtaagtcagaattttggatggcaccttcttgtattctacacaatta |
106 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
43822620 |
agattcaacagctgatctgtagccactgtaaactgggtcgtcagcagcagcttggtaagtcaaaattttggatggcaccttcttgtattctacacaatta |
43822719 |
T |
|
| Q |
107 |
aggtagtgattgacaacccctgaaaatgaaagttcaacaaggttattcaatgcatttggattggcggtgatttagcataataacgtt-gagtcaccgtga |
205 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
43822720 |
aggtagtgattgacaacccctgaaaatgaaagttcaacaaggttattcaatgcatttggattggcggtgatttagcataataacgtttgagtcaccgtga |
43822819 |
T |
|
| Q |
206 |
tttcgttaaattcttacgatttcaaacattcattaagtactaagtagcacaacaattacatatagtaatcccctcattccaaaaacctgaaaatagttta |
305 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
43822820 |
tttcgttaaattcttacgatttcaaacattcattaag-------tagcacaacaattacatatagtaatccccccattccaaaaacctgaaaatagttta |
43822912 |
T |
|
| Q |
306 |
tggtatttgtggatagataaaaaatggcaaatacaaattaatttagtagtaactatacgcaaactgtaataggatatatcctattacagtaactatccta |
405 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43822913 |
tggtatttgtggatagataaaaaatggcaaatacaaattaatttagtagtaactatacgcaaactgtaataggatatatcctattacagtaactatccta |
43823012 |
T |
|
| Q |
406 |
cactaaatgtaatagtaactatcctacattcattgaacaattacatggtactagtatgtagcatctacaaattaaatgcgatcacgagaaaaatgtaata |
505 |
Q |
| |
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|||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||||| |||| |
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| T |
43823013 |
cactaaatgtaataataactatcctacatccattgaacaattacatggtactagtatatagcaactacaaattaaatgtgatcacgagaaaaatgcaata |
43823112 |
T |
|
| Q |
506 |
aagtaccttccaatgatgttgcaacacccgtgaaattttttatcaaaagattatgcaaatcctctccagcccagataggatatatgcagatattaactcc |
605 |
Q |
| |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43823113 |
aagtaccttccagtgatgttgcaacacccgtgaaattttttatcaaaagattatgcaaatcctctccagcccagataggatatatgcagatattaactcc |
43823212 |
T |
|
| Q |
606 |
caaagatacagcagcaccaagtgcaatgagcaaaaatctacttatagatgtatcaagaaattcgccactatgataaccagatactgtaatgtagcaataa |
705 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43823213 |
caaagatacagcagcaccaagtgcaatgagcaaaaatctacttatagatgtatcaagaaattcgccactatgataaccagatactgtaatgtagcaataa |
43823312 |
T |
|
| Q |
706 |
gtaatcaagaacacacggaacccatattcataag |
739 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
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| T |
43823313 |
gtaatcaagaacacacggaacccatattcataag |
43823346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 473 - 739
Target Start/End: Original strand, 43816117 - 43816383
Alignment:
| Q |
473 |
caaattaaatgcgatcacgagaaaaatgtaataaagtaccttccaatgatgttgcaacacccgtgaaattttttatcaaaagattatgcaaatcctctcc |
572 |
Q |
| |
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||||| ||||| ||| | ||| ||||||| ||||| |||||||||| || |||||||||||| |||||||||||| || ||||||||||| |||||| || |
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| T |
43816117 |
caaataaaatgtgatgatgaggaaaatgttataaaataccttccaaagacgttgcaacacccatgaaattttttaccacaagattatgcagatcctcgcc |
43816216 |
T |
|
| Q |
573 |
agcccagataggatatatgcagatattaactcccaaagatacagcagcaccaagtgcaatgagcaaaaatctacttatagatgtatcaagaaattcgcca |
672 |
Q |
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||||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43816217 |
agcccagataggatatatgcagatattgactcccaaagacacagcagcaccaagcgcaatgagcaaaaatctacttatagatgtatcaagaaattcgcca |
43816316 |
T |
|
| Q |
673 |
ctatgataaccagatactgtaatgtagcaataagtaatcaagaacacacggaacccatattcataag |
739 |
Q |
| |
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|||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
43816317 |
gtatgataaccagataccgtaatgtagcaataagtgatcaagaacacacggaacccatattcataag |
43816383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 164; E-Value: 3e-87
Query Start/End: Original strand, 520 - 739
Target Start/End: Original strand, 43830387 - 43830606
Alignment:
| Q |
520 |
gatgttgcaacacccgtgaaattttttatcaaaagattatgcaaatcctctccagcccagataggatatatgcagatattaactcccaaagatacagcag |
619 |
Q |
| |
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||||||||||| ||| ||||||||||||||| |||||||| |||||| ||||| ||||| |||||||||||||||||||| ||||||||||| ||||||| |
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| T |
43830387 |
gatgttgcaacgcccatgaaattttttatcacaagattatacaaatcttctccggcccaaataggatatatgcagatattgactcccaaagagacagcag |
43830486 |
T |
|
| Q |
620 |
caccaagtgcaatgagcaaaaatctacttatagatgtatcaagaaattcgccactatgataaccagatactgtaatgtagcaataagtaatcaagaacac |
719 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| || ||| |||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
43830487 |
caccaagtgcaatgagcaaaaatctacttatagatgtatcaagaaactcaccagtatgataaccagatactgtaatgtagcaataagtgatcaagaacac |
43830586 |
T |
|
| Q |
720 |
acggaacccatattcataag |
739 |
Q |
| |
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|||||| ||||||||||||| |
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| T |
43830587 |
acggaaaccatattcataag |
43830606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 7 - 164
Target Start/End: Original strand, 43815420 - 43815575
Alignment:
| Q |
7 |
agattcaacagctgatctgtagccactgtaaactgggtcgtcagcagcagcttggtaagtcagaattttggatggcaccttcttgtattctacacaatta |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||| || ||||| |||||||| || |||||||||||||| |||||||||||||| ||||| ||| |
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| T |
43815420 |
agattcaacagctgatctgtagccactgtaaaccgggtcatccgcagctgcttggtacgtaagaattttggatggtaccttcttgtattcaacacagtta |
43815519 |
T |
|
| Q |
107 |
aggtagtgattgacaacccctgaaaatgaaagttcaacaaggttattcaatgcatttg |
164 |
Q |
| |
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||||||||||||||||||||||||||| ||||||||||| | | |||||| |||||| |
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| T |
43815520 |
aggtagtgattgacaacccctgaaaat--aagttcaacaaaggtgttcaattcatttg |
43815575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 7 - 71
Target Start/End: Original strand, 43830209 - 43830273
Alignment:
| Q |
7 |
agattcaacagctgatctgtagccactgtaaactgggtcgtcagcagcagcttggtaagtcagaa |
71 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||| |||||||| |||||||||||||||| |
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| T |
43830209 |
agattcaactgctgatctgtagccactgtaaactgggtcatcagcagctgcttggtaagtcagaa |
43830273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 106 - 157
Target Start/End: Original strand, 43830272 - 43830321
Alignment:
| Q |
106 |
aaggtagtgattgacaacccctgaaaatgaaagttcaacaaggttattcaat |
157 |
Q |
| |
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| T |
43830272 |
aaggtagtgattgacaacccctgaaaa--caagttcaacaaagttattcaat |
43830321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 54; Significance: 1e-21; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 510 - 739
Target Start/End: Complemental strand, 31807734 - 31807505
Alignment:
| Q |
510 |
accttccaatgatgttgcaacacccgtgaaattttttatcaaaagattatgcaaatcctctccagcccagataggatatatgcagatattaactcccaaa |
609 |
Q |
| |
|
|||||| ||||||||||| || || ||||||||||| | ||||| ||| | ||| || || ||||| || ||||||||||| | ||| || || | | |
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| T |
31807734 |
accttctaatgatgttgctacgcctgtgaaatttttcgcgacaagataatgtagatcttcaccggcccatattggatatatgcacacatttacgccaaca |
31807635 |
T |
|
| Q |
610 |
gatacagcagcaccaagtgcaatgagcaaaaatctacttatagatgtatcaagaaattcgccactatgataaccagatactgtaatgtagcaataagtaa |
709 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| || | | ||||| |||||| || || | |||| |||||||| ||| ||| ||||| || | |
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| T |
31807634 |
gatacagcagcaccaagagcaatgagcaaaaatctgtttgttgctgtatgaagaaagtctccggttcgatatccagatacaataacgtaacaataggtga |
31807535 |
T |
|
| Q |
710 |
tcaagaacacacggaacccatattcataag |
739 |
Q |
| |
|
|||||||||||||||| ||||||||||||| |
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|
| T |
31807534 |
tcaagaacacacggaatccatattcataag |
31807505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 694 - 738
Target Start/End: Original strand, 4999146 - 4999190
Alignment:
| Q |
694 |
atgtagcaataagtaatcaagaacacacggaacccatattcataa |
738 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| | |||||||||| |
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| T |
4999146 |
atgtagcaataagtgatcaagaacacacggaaacgatattcataa |
4999190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 694 - 733
Target Start/End: Original strand, 34803955 - 34803994
Alignment:
| Q |
694 |
atgtagcaataagtaatcaagaacacacggaacccatatt |
733 |
Q |
| |
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|||||||||||||| ||||||||||||||||| ||||||| |
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| T |
34803955 |
atgtagcaataagtgatcaagaacacacggaaaccatatt |
34803994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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