View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5339-Insertion-3 (Length: 287)
Name: NF5339-Insertion-3
Description: NF5339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5339-Insertion-3 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 260; Significance: 1e-145; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 8 - 287
Target Start/End: Original strand, 49673864 - 49674143
Alignment:
| Q |
8 |
tttagcacagtgtacacagtgtcaggctgcagtaggagacatgcccaatgatgacccctttgagtttctatctcctcagatctccattgtagtacaatta |
107 |
Q |
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| T |
49673864 |
tttagcacagtgtacacagtgtcaggctgcggtaagagacatgcccaatgatgacccctttgagtttctatctcctcagatctccattgtagtacaatta |
49673963 |
T |
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| Q |
108 |
tctgatgattgtaaccagtgtcttcatcatcaagggggacgatgccgacttaatattcaaggaaaattccactgtgccgaaggtatgctttcacaataca |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49673964 |
tctgatgattgtaaccagtgtcttcatcatcaagggggacgatgccgacttgatattcaaggaaaattccactgtgccgaaggtatgctttcacaataca |
49674063 |
T |
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| Q |
208 |
tgcacattgttaaaaagagtttaagagaggggaggttgtcctgagtgaagggcattaaatagacctcaaccaaaggttac |
287 |
Q |
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| T |
49674064 |
tgcgcattgttaaaaagagtttaagagaggggaggttgtcctgattgaagggcattaaatagacctcaaccaaaggttac |
49674143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 8 - 195
Target Start/End: Original strand, 49723769 - 49723956
Alignment:
| Q |
8 |
tttagcacagtgtacacagtgtcaggctgcagtaggagacatgcccaatgatgacccctttgagtttctatctcctcagatctccattgtagtacaatta |
107 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49723769 |
tttagcacagtgtacacagtgtcaggctgcagtaagagacatgcccaatgatgatccctttgagtttctatctcctcagatctccattgtagtacaatta |
49723868 |
T |
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| Q |
108 |
tctgatgattgtaaccagtgtcttcatcatcaagggggacgatgccgacttaatattcaaggaaaattccactgtgccgaaggtatgc |
195 |
Q |
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| T |
49723869 |
tctgatgattgtaaccagtgtcttcatcatcaagggggacgatgccgacttgatattcaaggaaaattccactgtgccgaaggtatgc |
49723956 |
T |
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