View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5339-Insertion-4 (Length: 244)
Name: NF5339-Insertion-4
Description: NF5339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5339-Insertion-4 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 7 - 244
Target Start/End: Original strand, 8517703 - 8517938
Alignment:
| Q |
7 |
agaatccattccctggtccatggagacgcaaactttagagcatcaataatcacnnnnnnnctttcttttcaaaatcaaacatgccatcatcttcttcact |
106 |
Q |
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| T |
8517703 |
agaatccattccctggtccatggagacgcaaactttagagcatcaataatcactttttttct--cttttcaaaatcaaacatgccatcatcttcttcact |
8517800 |
T |
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| Q |
107 |
tcctctccgcaactataaccaattcccattcttccatttccttcctacaacaactttcaacaataatcacttttttcctctaataaccaaaaaatcacaa |
206 |
Q |
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| T |
8517801 |
tcctctccgcaactataaccaattcccattcttccatttccttcctacaacaactttcaacaataatcacttttttcctctaataaccaaaaaatcacaa |
8517900 |
T |
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| Q |
207 |
tccatgtcctcttcttcttctaaatccaacaaccccac |
244 |
Q |
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| T |
8517901 |
tccatgtcctcttcttcttctaaatccaacaaccccac |
8517938 |
T |
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