View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5339_high_10 (Length: 312)
Name: NF5339_high_10
Description: NF5339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5339_high_10 |
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Alignment Details
Target: chr3 (Bit Score: 247; Significance: 1e-137; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 18 - 304
Target Start/End: Original strand, 35950313 - 35950597
Alignment:
| Q |
18 |
aggaaggagtgaaagtgaaaatgttcaagaccaagttgcagcagctatgccaccagagacggtggagtttgccgaaatacactgccacgaatgacggtcc |
117 |
Q |
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| T |
35950313 |
aggaaggagtgaaagtgaaaatgttcaagaccaagttgcagcagctatgccaccagagacggtggagtttgccgaaatacactgccacgaatgacggtcc |
35950412 |
T |
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| Q |
118 |
acaacacaagccaagctttaatgcctctgttcatgtcaatggtgtcaccttttcttcttctgatgctttcaattccgccaaagaagctcaaaaccaagct |
217 |
Q |
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| T |
35950413 |
gcaacacaagccaagctttaatgcctctgttcatgtcaatggtgtcacctttgcttcttctgatgctttcaattccgccaaagaagctcaaaaccaagct |
35950512 |
T |
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| Q |
218 |
gctatgaaagctttccgcaactttacttctcctctatcgggtacactctttctcaannnnnnnaatgtttctttggagatgatgatg |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||| |
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| T |
35950513 |
gctatgaaagctttccgcaactttacttctcctctatcgggt--actctttctcaatttttttaatgtttctttggagatgatgatg |
35950597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 109 - 255
Target Start/End: Original strand, 35955214 - 35955360
Alignment:
| Q |
109 |
tgacggtccacaacacaagccaagctttaatgcctctgttcatgtcaatggtgtcaccttttcttcttctgatgctttcaattccgccaaagaagctcaa |
208 |
Q |
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| T |
35955214 |
tgacggtccaccacacaatccaagctttaagggctctgtttttgtgaatggccttacctttacttcttctgataccttcaattcctccggagaagctcaa |
35955313 |
T |
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| Q |
209 |
aaccaagctgctatgaaagctttccgcaactttacttctcctctatc |
255 |
Q |
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| T |
35955314 |
aaccaagctgctatgaaagctttccgcaacttcacttctcctttatc |
35955360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 113 - 250
Target Start/End: Original strand, 35977839 - 35977976
Alignment:
| Q |
113 |
ggtccacaacacaagccaagctttaatgcctctgttcatgtcaatggtgtcaccttttcttcttctgatgctttcaattccgccaaagaagctcaaaacc |
212 |
Q |
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||||||| |||||| ||||| ||||| | |||||| |||||||||| | |||||| ||||||||||| ||| ||||| ||||||||||||| |||| |
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| T |
35977839 |
ggtccaccacacaatccaagttttaagggctctgtctttgtcaatggtttaacctttacttcttctgatatttttcattcctccaaagaagctcacaacc |
35977938 |
T |
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| Q |
213 |
aagctgctatgaaagctttccgcaactttacttctcct |
250 |
Q |
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| T |
35977939 |
aagctgctatgaaagctttgctcaacttttcttatcct |
35977976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 113 - 250
Target Start/End: Original strand, 35967652 - 35967786
Alignment:
| Q |
113 |
ggtccacaacacaagccaagctttaatgcctctgttcatgtcaatggtgtcaccttttcttcttctgatgctttcaattccgccaaagaagctcaaaacc |
212 |
Q |
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||||||| |||||| ||||||||||| | |||||| |||||||||| | |||||| |||| ||||||||| ||||| ||||||||||||| |||| |
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| T |
35967652 |
ggtccaccacacaaaccaagctttaagggctctgtctttgtcaatggtttaacctttacttc---tgatgcttttcattcctccaaagaagctcacaacc |
35967748 |
T |
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| Q |
213 |
aagctgctatgaaagctttccgcaactttacttctcct |
250 |
Q |
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|||||||| |||||||||| | ||||||| |||||||| |
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| T |
35967749 |
aagctgctctgaaagctttgctcaacttttcttctcct |
35967786 |
T |
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