View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5339_high_14 (Length: 230)
Name: NF5339_high_14
Description: NF5339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5339_high_14 |
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Alignment Details
Target: chr3 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 39613036 - 39613257
Alignment:
| Q |
1 |
ccacgaacatttgggccaagcccaatagctttgagcccaaaccacaatccgttgaaaaaaccaaaacaagatacatcaaaagcatcataaggtagagaaa |
100 |
Q |
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| T |
39613036 |
ccacgaacatttgggccaaacccaatagctttgagcccaaaccacaatccgttgaaaaaaccaaaacaagatacatcaaaagcatcataaggtagagaaa |
39613135 |
T |
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| Q |
101 |
ataagctagtgtttgaatgatctgcaggataagataagtggactgcgaagtagagtagaaaaacttgagtggttcaagaccagtgatcaaagaagagaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39613136 |
ataagctagtgtttgaatgatctgcaggataagataagtggactgcgaagtagagtagaaaaacttgagtggttcaagaccagtgatcaaagaagagaaa |
39613235 |
T |
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| Q |
201 |
catagaatagaaaagtagatag |
222 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
39613236 |
catagaatagaaaagtagatag |
39613257 |
T |
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