View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5339_high_4 (Length: 415)
Name: NF5339_high_4
Description: NF5339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5339_high_4 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 17 - 415
Target Start/End: Original strand, 39612398 - 39612787
Alignment:
| Q |
17 |
cataggactaaaaagacagacaaatggtatccaaaaccatgtcaaggaaagcagatagattctatacttttacatcaacaacaatgaaaaagtagagtca |
116 |
Q |
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| T |
39612398 |
cataggactaaaaagacagacaaatggtatccaaaaccatgtcaaggaaagcagagagattctatacttttacatcaacaacaatgaaaaagtagagtca |
39612497 |
T |
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| Q |
117 |
cattctactcaagacacaccaaatttaatttttaattcaaatccaacatcactaatttcttagcaaggtaggtaatgcttcaatctaataatgtatcaca |
216 |
Q |
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| T |
39612498 |
cattctactcaagacacaccaaatttaatttttaattcaaatccaacatcactaatttcttagcaaggtaggtaatgcttcaatctaataatgtatcaca |
39612597 |
T |
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| Q |
217 |
tgcatgtcattaaaagggaacaatgaaacatatagaataggaagtatagcgattataatcataaccatgaccccaatttattgatgcaacgaatctgaat |
316 |
Q |
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| T |
39612598 |
tgcatgtcattaaaagggaaca---------atagaataggaagtatagtgattataatcataaccatgaccccaatttatttatgcaacgaatcttaat |
39612688 |
T |
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| Q |
317 |
gctggctaactaataagccaaagccttacggcattacattaaatcacaatatcacatcaacaagattggtatattgcttcaaataatccaaatttttaa |
415 |
Q |
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| T |
39612689 |
gatggctaactaataagccaaagccttacggcattacattaaatcacaacatcacatcaacaagattggtatatttcttcaaataatccaaatttttaa |
39612787 |
T |
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