View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5339_high_5 (Length: 409)
Name: NF5339_high_5
Description: NF5339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5339_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 362; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 1 - 391
Target Start/End: Complemental strand, 36068676 - 36068284
Alignment:
| Q |
1 |
agtgaagaggtaagtaaaatcaaactaaggattgtttcaggtaagatttgaactcatgttctcacaaacaatttatccttaattgttgttcgttaatcac |
100 |
Q |
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|||||||||||||||||||||| |||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36068676 |
agtgaagaggtaagtaaaatcagactaaggattgtttcaggcaagattcgaactcatgttctcacaaacaatttatccttaattgttgttcgttaatcac |
36068577 |
T |
|
| Q |
101 |
ttaagtctaattccgtgcttcaattttccaactcatacctactgaactacaccttctaggaca--aaatattttacttttgattctaaatattttcttat |
198 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
36068576 |
ttaagtctaatttcgtgcttcaattttccaactcatacctactgaactacaccttctaggacataaaatattttacttttgattctaaatattttcttat |
36068477 |
T |
|
| Q |
199 |
gacaaacataaacatttaaattgaaatataatagagaaagagaccagccaaagaggtgagtagggtggttttgccacagccagaaggacccataacagcc |
298 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36068476 |
gacaaacataaacatttaaattgaaatataatagagaaagagaccagccaaagaggtgagtagggtggttttgccacagccagaaggacccataacagcc |
36068377 |
T |
|
| Q |
299 |
atgatcctaccaggttcagcaaaaccagttacaccatcaagtaacttcttcttcttgtcttcaccgattgttaccgttacatcttcccatatc |
391 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
36068376 |
atgatcctaccaggttcagcaaaaccagttacaccatcaagtaacttcttcttcttgtcttcaccaattgttaccgttacatcttcccatatc |
36068284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 263 - 348
Target Start/End: Complemental strand, 29461477 - 29461392
Alignment:
| Q |
263 |
gtggttttgccacagccagaaggacccataacagccatgatcctaccaggttcagcaaaaccagttacaccatcaagtaacttctt |
348 |
Q |
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|||| ||| ||| |||||||||||||||||| ||||||||| |||||||| |||||||||||| ||| |||| ||||||| |||| |
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| T |
29461477 |
gtggattttccagagccagaaggacccataatagccatgattctaccaggctcagcaaaaccatttaacccattaagtaacctctt |
29461392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 263 - 343
Target Start/End: Complemental strand, 29426210 - 29426130
Alignment:
| Q |
263 |
gtggttttgccacagccagaaggacccataacagccatgatcctaccaggttcagcaaaaccagttacaccatcaagtaac |
343 |
Q |
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|||| ||| ||| |||||||||||||||||| ||||||||| |||||||| |||||||||||| | | ||||| ||||||| |
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| T |
29426210 |
gtggattttccagagccagaaggacccataatagccatgattctaccaggctcagcaaaaccattaagaccattaagtaac |
29426130 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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