View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5339_high_9 (Length: 324)

Name: NF5339_high_9
Description: NF5339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5339_high_9
NF5339_high_9
[»] chr4 (1 HSPs)
chr4 (11-308)||(42468007-42468296)


Alignment Details
Target: chr4 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 11 - 308
Target Start/End: Original strand, 42468007 - 42468296
Alignment:
Q  11 ttattcttatagcgagttttctatcagtaaatgttgaatcttttatccaagagnnnnnnnngaccagaaaacttcgacacatctgagcaagtaatagctc 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||    
T  42468007 ttattcttatagcgagttttctatcagtaaatgttgaatcttttatccaagagagaaaaaagaccagaaaacttcgacacatctgagcaagtaatagctc 42468106  T
Q  111 aataagtatacactcattattaatggaaaagacatattgactagtaacaatatatttgtagggatgaaatacataacgaagcttatattattttcatcct 210  Q
    |||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  42468107 aataagcatacactcattattaatggaaaagacatattgactagta-caatatatttgtagggatgaaatacataatgaagcttatattattttcatcct 42468205  T
Q  211 gcgtgatgcggatcaatatgtagctagcttacgtaattaacaacagaagccaacaattactagatatgtggaaaacaacaaagagtcacacttttatt 308  Q
    ||||||||| | |||||||||||||||||||| ||||||||||||||||||||||||       ||||||||||||||||| ||||||||||||||||    
T  42468206 gcgtgatgcaggtcaatatgtagctagcttacataattaacaacagaagccaacaat-------tatgtggaaaacaacaaggagtcacacttttatt 42468296  T

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