View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5339_low_1 (Length: 539)
Name: NF5339_low_1
Description: NF5339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5339_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 243; Significance: 1e-134; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 20 - 278
Target Start/End: Original strand, 51855298 - 51855556
Alignment:
| Q |
20 |
actcaaatgagtcaggcatcacaagggagcatccattattgaaacattaaacagaattaactctgtccaataacttgctagatctggtctctgccagcca |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | ||||||||||||||||||||||| ||||||||||||| |
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| T |
51855298 |
actcaaatgagtcaggcatcacaagggagcatccattatttaaacattaaacagaattaagtttgtccaataacttgctagatctgatctctgccagcca |
51855397 |
T |
|
| Q |
120 |
cttcccaatcaagcgatatacatctgaaacctcttcattactttgataattttgtgatatgtacattccaaggttgatagccatctcattttgaccttga |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51855398 |
cttcccaatcaagcgatatacatctgaaacctcttcattactttgataattttgtgatatgtacattccaaggttgatagccatctcattttgaccttga |
51855497 |
T |
|
| Q |
220 |
gcacgaaaaagctttgcttcttcaatctgctatccagaagcagagcaaacaattagtac |
278 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51855498 |
gcacgaaaaagctttgcttcttcaatctgctatccagaagcagagcaaacaattagtac |
51855556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 20 - 278
Target Start/End: Complemental strand, 35043183 - 35042925
Alignment:
| Q |
20 |
actcaaatgagtcaggcatcacaagggagcatccattattgaaacattaaacagaattaactctgtccaataacttgctagatctggtctctgccagcca |
119 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | | ||||||||||||||||||||||||||||||||||||| |
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| T |
35043183 |
actcaaatgagtcaggcatcacaagggagcatccattatttaaacattaaacagaattcagtttgtccaataacttgctagatctggtctctgccagcca |
35043084 |
T |
|
| Q |
120 |
cttcccaatcaagcgatatacatctgaaacctcttcattactttgataattttgtgatatgtacattccaaggttgatagccatctcattttgaccttga |
219 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35043083 |
cttcccaatcaagcgatatacatccgaaacctcttcattactttgataattttgtgatatgtacattccaaggttgatagccatctcattttgaccttga |
35042984 |
T |
|
| Q |
220 |
gcacgaaaaagctttgcttcttcaatctgctatccagaagcagagcaaacaattagtac |
278 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
35042983 |
gcacgaaaaagctttgcttcttcaatctgccatccagaagcagagcaaacaattagtac |
35042925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 274 - 527
Target Start/End: Original strand, 51855844 - 51856097
Alignment:
| Q |
274 |
agtacacaaatacacaaatctggcagatgaacttcccttaccagccttagggccaaagactattctccaataacataattctaacattttatattcaagt |
373 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
51855844 |
agtacacaaatacacaaatctggcagatgaacttcccttaccagccttagggccaaaggctattctccaataacataattctaacattttatattcaagt |
51855943 |
T |
|
| Q |
374 |
aaagttaagtcaacatgaacaaacatttnnnnnnnnncattaactagatcaaattcaaacattaactaattaaacctgtttttgtctagaagcagcatca |
473 |
Q |
| |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51855944 |
aaagttaagtcaacatgaacaaacattttaaaaaaaacattaactagatcaaattcaaacattaactaattaaacctgtttttgtctagaagcagcatca |
51856043 |
T |
|
| Q |
474 |
agtaatgtccaaaacctcagcgtcaaggtcaacctcacattatgttcatctcac |
527 |
Q |
| |
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|||||||||||||||||||||||||||||| ||||||||| |||||| |||||| |
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| T |
51856044 |
agtaatgtccaaaacctcagcgtcaaggtccacctcacatcatgttcttctcac |
51856097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 274 - 327
Target Start/End: Complemental strand, 35042641 - 35042588
Alignment:
| Q |
274 |
agtacacaaatacacaaatctggcagatgaacttcccttaccagccttagggcc |
327 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| | |||||||||||||||| |
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| T |
35042641 |
agtacacaaatacacaaatctggcagatgaacttctcctaccagccttagggcc |
35042588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 210; Significance: 1e-115; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 274 - 527
Target Start/End: Original strand, 8945031 - 8945283
Alignment:
| Q |
274 |
agtacacaaatacacaaatctggcagatgaacttcccttaccagccttagggccaaagactattctccaataacataattctaacattttatattcaagt |
373 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
8945031 |
agtacacaaatacacaaatctggcagatgaacttcccttaccagccttaggggcaaaggctattctccaataacataattctaacattttatattcaagt |
8945130 |
T |
|
| Q |
374 |
aaagttaagtcaacatgaacaaacatttnnnnnnnnncattaactagatcaaattcaaacattaactaattaaacctgtttttgtctagaagcagcatca |
473 |
Q |
| |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8945131 |
aaagttaagtcaacatgaacaaacattt-taaaaaaacattaactagatcaaattcaaacattaactaattaaacctgtttttgtctagaagcagcatca |
8945229 |
T |
|
| Q |
474 |
agtaatgtccaaaacctcagcgtcaaggtcaacctcacattatgttcatctcac |
527 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
8945230 |
agtaatgtccaaaacctcagcgtcaaggtcaacctcacattatgttcttctcac |
8945283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 20 - 165
Target Start/End: Original strand, 8944533 - 8944678
Alignment:
| Q |
20 |
actcaaatgagtcaggcatcacaagggagcatccattattgaaacattaaacagaattaactctgtccaataacttgctagatctggtctctgccagcca |
119 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||| | ||||||||||||||||| ||||||||||||||||||| |
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| T |
8944533 |
actcaaatgagtcaggcatcacaggggagcatccattatttaaacattaaacagaattaagtttgtccaataacttgctacatctggtctctgccagcca |
8944632 |
T |
|
| Q |
120 |
cttcccaatcaagcgatatacatctgaaacctcttcattactttga |
165 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8944633 |
cttcccaatcaagcgatatacatctgaaacctcttcattactttga |
8944678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 140 - 267
Target Start/End: Original strand, 1869515 - 1869644
Alignment:
| Q |
140 |
catctgaaacctcttcattactttgataatttt--gtgatatgtacattccaaggttgatagccatctcattttgaccttgagcacgaaaaagctttgct |
237 |
Q |
| |
|
|||||||| |||||||||||||||||||| || ||||||||||||| | ||||||||||||||| ||||||||||||||||||| |||||| |||||| |
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| T |
1869515 |
catctgaagtctcttcattactttgataatatttggtgatatgtacatcctaaggttgatagccatttcattttgaccttgagcacaaaaaagttttgct |
1869614 |
T |
|
| Q |
238 |
tcttcaatctgctatccagaagcagagcaa |
267 |
Q |
| |
|
|||||||||||| |||| ||| |||||||| |
|
|
| T |
1869615 |
tcttcaatctgccatccggaaccagagcaa |
1869644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 209 - 278
Target Start/End: Original strand, 8944674 - 8944743
Alignment:
| Q |
209 |
tttgaccttgagcacgaaaaagctttgcttcttcaatctgctatccagaagcagagcaaacaattagtac |
278 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8944674 |
tttgaccttgagcacgaaaaagctttgcttcttcaatctgctatccagaagcagagcaaacaattagtac |
8944743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 108; Significance: 5e-54; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 20 - 143
Target Start/End: Complemental strand, 26887126 - 26887003
Alignment:
| Q |
20 |
actcaaatgagtcaggcatcacaagggagcatccattattgaaacattaaacagaattaactctgtccaataacttgctagatctggtctctgccagcca |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | |||||||||||||||||||||||||||||||| |||| |
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| T |
26887126 |
actcaaatgagtcaggcatcacaagggagcatccattatttaaacattaaacagaattaagtttgtccaataacttgctagatctggtctctgccggcca |
26887027 |
T |
|
| Q |
120 |
cttcccaatcaagcgatatacatc |
143 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
26887026 |
cttcccaatcaagcgatatacatc |
26887003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 445 - 503
Target Start/End: Original strand, 24269829 - 24269886
Alignment:
| Q |
445 |
aaacctgtttttgtctagaagcagcatcaagtaatgtccaaaacctcagcgtcaaggtc |
503 |
Q |
| |
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|||||||||| ||||||||||||| ||||||| ||||||||||||||||| ||| |||| |
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| T |
24269829 |
aaacctgtttctgtctagaagcagtatcaagt-atgtccaaaacctcagcatcagggtc |
24269886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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