View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5339_low_11 (Length: 316)

Name: NF5339_low_11
Description: NF5339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5339_low_11
NF5339_low_11
[»] chr4 (1 HSPs)
chr4 (10-300)||(43987091-43987382)


Alignment Details
Target: chr4 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 10 - 300
Target Start/End: Complemental strand, 43987382 - 43987091
Alignment:
Q  10 catcatcatttcaaatcttttcctcactcctccttccttcc----cccaattacatttacaaatccacaaaaacagataaataaatttagttacagcaac 105  Q
    |||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43987382 catcatcatttcaaatcttttcctcactcctccttccttccttcccccaattacatttacaaatccacaaaaacagataaataaatttagttacagcaac 43987283  T
Q  106 cgtaatcctccacgtgtccataacgaatcttccccagttcctactcatttcctctaaatcctagtcaaccaaatatcttaacacgtgtccactatattcc 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43987282 cgtaatcctccacgtgtccataacgaatcttccccagttcctactcatttcctctaaatcctagtcaaccaaatatcttaacacgtgtccactatattcc 43987183  T
Q  206 acagtcagcaacaacacacgctcatgtccttctcttcctcctataatataaccttaccttacactatccaaattcaactcaactcaaaacaaaac 300  Q
    |||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  43987182 acagtcagcaacaacacacgctcatgtccttctct---tcctataatataaccttaccttacactatccaagttcaactcaactcaaaacaaaac 43987091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University