View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5339_low_15 (Length: 237)
Name: NF5339_low_15
Description: NF5339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5339_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 159; Significance: 8e-85; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 1 - 179
Target Start/End: Complemental strand, 2875244 - 2875071
Alignment:
| Q |
1 |
ctgaactcactgtggtaccagttgactaagccttaaatgataattgacatcatcaagtagcaacataaacctgtcgcttctagtttccactaattaactt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2875244 |
ctgaactcactgtggtaccagttgactaagccttaaatgataattgacatcatcaagtagcaacataaacctgtcgcttctagtttccactaattaactt |
2875145 |
T |
|
| Q |
101 |
tagcatttcgctttcatatactcaaatcaaaggtcatgaacaacaactcttcaaaaagcaatgcaaataagaaaggaag |
179 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2875144 |
tagcatttcgctttcatatact-----caaaggtcatgaacaacaactcttcaaaaagcaatgcaaataagaaaggaag |
2875071 |
T |
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