View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5339_low_2 (Length: 458)
Name: NF5339_low_2
Description: NF5339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5339_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 432; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 1 - 448
Target Start/End: Original strand, 52856552 - 52856999
Alignment:
| Q |
1 |
tcttttttagagttttcaggattagtaaatggaccatcaaacgacgaggaagctgtcagaagcaaaatagcccaatctgaaccttcaactctaagcttct |
100 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52856552 |
tctttcttagagttttcaggattagtaaatggaccatcaaacgacgaggaagctgtcagaagcaaaatagcccaatctgaaccttcaactctaagcttct |
52856651 |
T |
|
| Q |
101 |
tatcatccaaaacatgtataactccattttcattactgatctacacatcaagaactgcagaaaactgaattccctttggttcgtcacttgaattcacttg |
200 |
Q |
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| T |
52856652 |
tatcatccaaaacatgtataactcctttttcattactgatctgcacatcaagaactgcagaaaactgaattccctttggttcgtcacttgaattcacttg |
52856751 |
T |
|
| Q |
201 |
tggcgggatccttttgccaggacagcttccttccattattatttgatttttgctgcttaaccgcatattgtgatgtaatttgctatccaaagatactgta |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
52856752 |
tggcgggatccttttgccaggacagcttccttccattattatttgatttttgctgcttaaccgcgtattgtgatgtaatttgctatccaaagatactgta |
52856851 |
T |
|
| Q |
301 |
aatgataatgaccccgaattgcttgtggaaaactttgtcactagcacttggtctggattagaagcaaaatgctctctggtaaattcaacatatcacccac |
400 |
Q |
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| T |
52856852 |
aatgataatgaccccgaattgcttgtggaaaactttgtcactagcacttggtctggattagaagcaaaatgctctctggtaaattcaacatatcacccac |
52856951 |
T |
|
| Q |
401 |
attatattttatttttgctgttgcattatccaaatcaagttctctgtg |
448 |
Q |
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| T |
52856952 |
attatattttatttttgctgttgcattatccaaatcaagttctctgtg |
52856999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 10 - 436
Target Start/End: Original strand, 48487370 - 48487794
Alignment:
| Q |
10 |
gagttttcaggattagtaaatggaccatcaaacgacgaggaagctgtcagaagcaaaatagcccaatctgaaccttcaactctaagcttcttatcatcca |
109 |
Q |
| |
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|||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| || || | |
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| T |
48487370 |
gagtcttcaggattagtaaatggaccatcaaaggacgaggaagctgtcagaagcaaaatagcccaatctgaaccttcaactctaaacttcttgtcgtcta |
48487469 |
T |
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| Q |
110 |
aaacatgtataactccattttcattactgatctacacatcaagaactgcagaaaactgaattccctttggttcgtcacttgaattcacttgtggcgggat |
209 |
Q |
| |
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||||||||||||| || || |||||||| |||| || ||||||||||||| ||||||||||||| ||| |||| |||||||||||| |||||||| ||| |
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| T |
48487470 |
aaacatgtataacacctttgtcattactaatctgcatatcaagaactgcacaaaactgaattcctttttgttcaccacttgaattcatttgtggcgcgat |
48487569 |
T |
|
| Q |
210 |
ccttttgccaggacagcttccttccattattatttgatttttgctgcttaaccgcatattgtgatgtaatttgctatccaaagatactgtaaatgataat |
309 |
Q |
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||||||||||||||| ||||||||||||||||| ||||||| || ||||| |||| |||||||||||| | |||||||||||||||||||||||||||| |
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| T |
48487570 |
ccttttgccaggacaacttccttccattattatctgattttggccgcttacccgcgaattgtgatgtaactcgctatccaaagatactgtaaatgataat |
48487669 |
T |
|
| Q |
310 |
gaccccgaattgcttgtggaaaactttgtcactagcacttggtctggattagaagcaaaatgctctctggtaaattcaacatatcacccacattatattt |
409 |
Q |
| |
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|| ||||| ||||||||||||||||||||| ||||||||||||| || ||||||||||||||||||||||||||||| |||||||| ||||| || || |
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| T |
48487670 |
gaacccgacttgcttgtggaaaactttgtcgctagcacttggtccggtttagaagcaaaatgctctctggtaaattc--tatatcacctacattgtactt |
48487767 |
T |
|
| Q |
410 |
tatttttgctgttgcattatccaaatc |
436 |
Q |
| |
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|||||||||||| ||| |||||||||| |
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|
| T |
48487768 |
tatttttgctgtagcactatccaaatc |
48487794 |
T |
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