View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5339_low_3 (Length: 430)
Name: NF5339_low_3
Description: NF5339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5339_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 396; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 3 - 414
Target Start/End: Complemental strand, 37662691 - 37662280
Alignment:
| Q |
3 |
aggaggagcagagattgtagcagaaccataaccaaaacttgatgaatctttcagaatcccttcaagaacagaatgcaatgcagttgaaaatgaagaatac |
102 |
Q |
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| T |
37662691 |
aggaggagcaaagattgtagcagaaccataaccaaaacttgatgaatctttcagaatcccttcgagaacagaatgcaatgcagttgaaaatgaagaatac |
37662592 |
T |
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| Q |
103 |
ccttttgaaccaagtaactgaacaaccttgttccattcaacaaagttcttgaaatcaccaacttcatatgttgaatttgtcttgaatgaaggacaagttg |
202 |
Q |
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| T |
37662591 |
ccttttgaaccaagtaactgaacaaccttgttccattcaacaaagttcttgaaatcaccaacttcatatgttgaattggttttgaatgaaggacaagttg |
37662492 |
T |
|
| Q |
203 |
gtgaacgaatgaaatcagaaccaccttgtaaaacttcacgttgcaaagaagaaaaaggtccaagaacaccatgaatgttgaattcttcaccaagaaacat |
302 |
Q |
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| T |
37662491 |
gtgaacgaatgaaatcagaaccaccttgtaaaacttcacgttgcaaagaagaaaaaggtccaagaacaccatgaatgttgaattcttcaccaagaaacat |
37662392 |
T |
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| Q |
303 |
atcagggtttgatatcaaaacatggttgatctcaactgttttttgcaaagtatcaaccttagtgagtgatgcattcttttggcgaaaaagggttgtttcg |
402 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37662391 |
atcagggtttgatatcaaaacatggttgatctcaactgttttttgcaaagtatcaaccttagtgagtgatgcattcttttggcgaaaaagggttgtttcg |
37662292 |
T |
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| Q |
403 |
caagttccttgt |
414 |
Q |
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| T |
37662291 |
caagttccttgt |
37662280 |
T |
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