View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5339_low_6 (Length: 356)
Name: NF5339_low_6
Description: NF5339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5339_low_6 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 1 - 356
Target Start/End: Original strand, 14811344 - 14811699
Alignment:
| Q |
1 |
aaatgtaaatgaacagtaagacaaagcaaaccagactacaaaaacgaaacagataccaaccaatcgagcgggatcaaaacgtggccttttgatctcatca |
100 |
Q |
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| T |
14811344 |
aaatgtaaataaacagtaagacaaagcaaaccagactacaaaaacgaaacagataccaaccaaccgagcgggatcaaaacgtggccttttgatctcatca |
14811443 |
T |
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| Q |
101 |
gagcgaagcaaagtcaacccatacttatgaatgagaaagctatcatccattacaacccttgtacccaacctaagcataatcctctttttgttaccagtgg |
200 |
Q |
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| T |
14811444 |
gagcgaagcgaagtcaacccatacttatgaatgagaaagctatcatccattacaacccttgtacccaacctaagcataatgctctttctgttaccagtgg |
14811543 |
T |
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| Q |
201 |
caaaggagccattaacactatcaacaacattgaaagtggtaataacatacactaaatgcccgaagaacaaaggtcctaagcggccaacacactaggatgg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14811544 |
caaaggagccattaacactatcaacaacattgaaagtggtgataacatacactaaatgcccgaagaacaaaggtcctaagcggccaacacactaggatgg |
14811643 |
T |
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| Q |
301 |
gattgttgcctgaatcttgttgccctacgaacaaaataaacacaatagaatcaaga |
356 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14811644 |
gattgttgcctgaatcttgttgccctacgaacaaaataaacacaatagaatcaaga |
14811699 |
T |
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