View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5339_low_9 (Length: 325)
Name: NF5339_low_9
Description: NF5339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5339_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 113; Significance: 3e-57; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 195 - 311
Target Start/End: Original strand, 31222205 - 31222321
Alignment:
| Q |
195 |
accgtagagttccgaggagaaacattatcgatattgtcgacaggaacaacaacgtgaggcttgtcttgtcctacgtgaaggacattttcgatggtaccaa |
294 |
Q |
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| T |
31222205 |
accgtagagttccgaggagaaacattatcgatattgtcgacaggaacaacaacgtgagacttgtcttgtcctacgtgaaggacattttcgatggtaccaa |
31222304 |
T |
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| Q |
295 |
agttgagaatcttcatg |
311 |
Q |
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| T |
31222305 |
agttgagaatcttcatg |
31222321 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 10 - 106
Target Start/End: Original strand, 31222032 - 31222128
Alignment:
| Q |
10 |
catcatcatggtttctcatatccatactgaggtggcaaatcctacaatctctcttcacaccattatcaacattatccacactctccagatccaattc |
106 |
Q |
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| T |
31222032 |
catcatcatggtttctcatatccatactgaggtggcaaatcctacaatctctcttcacaccatcatcaacattatccacactctccagatccaattc |
31222128 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 10 - 103
Target Start/End: Original strand, 31246423 - 31246519
Alignment:
| Q |
10 |
catcatcatggtttctcatatccatactgaggtggcaaatcctacaatctctcttcacaccattatcaacattatc---cacactctccagatccaa |
103 |
Q |
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| T |
31246423 |
catcatcttggttttccatatccatgctgagttggcaaatcctacaatctctcttcacatcatcatcaacaacaacaaccacactctccagatccaa |
31246519 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 63
Target Start/End: Original strand, 34933844 - 34933892
Alignment:
| Q |
15 |
tcatggtttctcatatccatactgaggtggcaaatcctacaatctctct |
63 |
Q |
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| T |
34933844 |
tcatggtttgtcatatccatactaagatgacaaatcctacaatccctct |
34933892 |
T |
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