View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5340-Insertion-1 (Length: 299)
Name: NF5340-Insertion-1
Description: NF5340
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5340-Insertion-1 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 8 - 299
Target Start/End: Original strand, 4951741 - 4952032
Alignment:
| Q |
8 |
agcaggtgggtggatcatagaaaattaaaaagaaggagcatagagtaatttatatctttataatggaaactggaaaatagtctcatctcattctcaatca |
107 |
Q |
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| T |
4951741 |
agcaggtggatggatcatagaaagttaaaaagaaggaacatagagtaatttatatctttataatggaaactagaaaatagtctcatctcattctcaatca |
4951840 |
T |
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| Q |
108 |
tgaattttagaggaatcatctttatgttgagatgtgttgcatggaatttcacataaatcttccatgttgcaaggaaaagagttaccaatttgcatgtcag |
207 |
Q |
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| T |
4951841 |
tgaattttagaggaatcatctttgtgttgagatgtgttgcatggaatttcacataaatcttccatgttgcaaggaaaagagttaccaatttgcatgtcag |
4951940 |
T |
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| Q |
208 |
ctaccatttgacgaagatcaaaagtttcttctttaagacgtgtattctcttgaacaactttgtcatgggactcagacacatggtttagtttg |
299 |
Q |
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| T |
4951941 |
ctaccatttgacgaagatcaaaagtttcttctttaagtcgtgcattctcttgaacaactgtgtcatgtgactcagacacatggtttagtttg |
4952032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 161; Significance: 7e-86; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 99 - 298
Target Start/End: Complemental strand, 10483843 - 10483641
Alignment:
| Q |
99 |
tctcaatcatgaattttagaggaatcatc---tttatgttgagatgtgttgcatggaatttcacataaatcttccatgttgcaaggaaaagagttaccaa |
195 |
Q |
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| T |
10483843 |
tctcaatcatgaattttagaggaatcatcatctttgtgttgagatgtgttgcatggaatttcacataaatcttccatgttgcaaggaaaagagttaccaa |
10483744 |
T |
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| Q |
196 |
tttgcatgtcagctaccatttgacgaagatcaaaagtttcttctttaagacgtgtattctcttgaacaactttgtcatgggactcagacacatggtttag |
295 |
Q |
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| T |
10483743 |
tttgcatgtcagctaccatttggcgaagatcaaaagtttcttccttaagtcttgcattctcttgaacaactttgtcatgtgactcagacacatggtttag |
10483644 |
T |
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| Q |
296 |
ttt |
298 |
Q |
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| T |
10483643 |
ttt |
10483641 |
T |
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