View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5340-Insertion-2 (Length: 915)
Name: NF5340-Insertion-2
Description: NF5340
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5340-Insertion-2 |
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Alignment Details
Target: chr1 (Bit Score: 766; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 766; E-Value: 0
Query Start/End: Original strand, 7 - 806
Target Start/End: Original strand, 6674518 - 6675314
Alignment:
| Q |
7 |
agtccacttgcatattcggcgtattcctatagaggagattccagtttctgaaactaaagctgcttcttggctaatggatgcattccaaatcaaggaccaa |
106 |
Q |
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| T |
6674518 |
agtccacttgcatattcggcgtattcctatagaggagattccagtttctgaaactaaagctgcttcttggctaatggatgcattccaaatcaaggatcaa |
6674617 |
T |
|
| Q |
107 |
ttgctttctgatttcaaggttcaaggccatttccctaaccaacaaaatgaagaggaaatctcgacattcaagtgcctattcacttttaccgtgatagttt |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6674618 |
ttgctttctgatttcaaggttcaaggccatttccctaaccaacaaaatgaagaggaaatctcgacattcaagtgcctattcacttttaccgtgatagttt |
6674717 |
T |
|
| Q |
207 |
gttttaccgccttgtttacttattttaccttgttttctcacatcgggttcaagttatatgtaggtctctcttgtgcatatctttctatggcaacgcgcta |
306 |
Q |
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| T |
6674718 |
gttttaccgccttgtttacttattttaccttgttttctcacatcgggttcaagttatatgtaggtctctcttgtgcatatctttctatggcaacgcgcta |
6674817 |
T |
|
| Q |
307 |
caaaattcaattgatgcctttaacaagttatgtacatgcattctataacaggaagaaacaaaagaatgcatagtgttctcaattttaaaggtcaaatgta |
406 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6674818 |
caaaattcaattgatgcctttaacaaattatgtacatgcattctataacaggaagaaacaaaagaatgcatagtgttctcaattttaaaggtcaaatgta |
6674917 |
T |
|
| Q |
407 |
caattttggtcttgaacttgatattgaagtgtacattatttgcttaatttgattcttttcatagttttgttcagacagtgccaggaaatcaaatgcacaa |
506 |
Q |
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| T |
6674918 |
caattttggtcttgaacttgatattgaagtgtacattatttgcttaatttgattcttttcatagttttgttcagacagtgccaggaaatcaaatgcacaa |
6675017 |
T |
|
| Q |
507 |
ttttacaaactggtattttgttgctcgaaaccttagttagacttctgatatcaatgcattgaaactcattctcaggtcttgttaatttcatttttataac |
606 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6675018 |
ttttacaaactggtattttgttgctcgaaaccttacttagacttctgatatcaatgcattgaaactcattctcaggtcttgttaatttcatttttataac |
6675117 |
T |
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| Q |
607 |
gactaacttgtagttacggtgggtatctaatatctctctacaatgactcaagaactcccaacacattacaaattaattttgagcctaagatagcatcagc |
706 |
Q |
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| T |
6675118 |
gactaacttgtagttacggtgggtatc---tatctctctacaatgactcaagaactcccaacacattacaaattaattttgaacctaagatagcatcaac |
6675214 |
T |
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| Q |
707 |
tattatcttactattaaattaaaaaataacttgatcatattgatgagccagatatttcttccagatgtgttcctttagacagccaaatattaccttttta |
806 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6675215 |
tattatcttactattaaattaaaaaataacttgatcatattgatgagccagatatttcttccagatgtgttcctttagacagccaaatattaccttttta |
6675314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 78; E-Value: 7e-36
Query Start/End: Original strand, 806 - 915
Target Start/End: Original strand, 6675362 - 6675469
Alignment:
| Q |
806 |
acttcagatacaccaaaggatgatagagatttgattacaaagactggcatgctgctaaaagagagtggatttttgataattaaatggattaaccgctagt |
905 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||| |||||||||||||| ||| |||||||||||||| |
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| T |
6675362 |
acttcagatacaccaa-ggatgatagagatttgattacaaagactgacatgctgctaagagagagttgatttttgataatt-aattgattaaccgctagt |
6675459 |
T |
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| Q |
906 |
ttccttataa |
915 |
Q |
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|||||||||| |
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| T |
6675460 |
ttccttataa |
6675469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 656 - 758
Target Start/End: Original strand, 6676188 - 6676290
Alignment:
| Q |
656 |
aagaactcccaacacattacaaattaattttgagcctaagatagcatcagctattatcttactattaaattaaaaaataacttgatcatattgatgagcc |
755 |
Q |
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||||||||||||| || |||||||||||||||| ||||||||||||||||||||||| |||||||||||| |||||||||||||||||| | | ||||| |
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| T |
6676188 |
aagaactcccaactcaatacaaattaattttgaacctaagatagcatcagctattatgttactattaaatccaaaaataacttgatcatagttacgagcc |
6676287 |
T |
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| Q |
756 |
aga |
758 |
Q |
| |
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||| |
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| T |
6676288 |
aga |
6676290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 454 - 539
Target Start/End: Original strand, 6675964 - 6676048
Alignment:
| Q |
454 |
tttgattcttttcatagttttgttcagacagtgccaggaaatcaaatgcacaattttacaaactggtattttgttgctcgaaacct |
539 |
Q |
| |
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|||||||||||||||||||||||||||||| | |||||||||| |||| || ||||||||||||| ||||||||||||||||| |
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| T |
6675964 |
tttgattcttttcatagttttgttcagacattatttggaaatcaaaagcactatattacaaactggta-tttgttgctcgaaacct |
6676048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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