View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5340-Insertion-3 (Length: 654)
Name: NF5340-Insertion-3
Description: NF5340
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5340-Insertion-3 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 220; Significance: 1e-120; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 220; E-Value: 1e-120
Query Start/End: Original strand, 399 - 654
Target Start/End: Complemental strand, 24885385 - 24885130
Alignment:
| Q |
399 |
ggccactaagcctggttttcttcttctacttcttcatcctcttccccagaagatcgctacattcggtggccgacttcaacgcagattcaagcccttcctt |
498 |
Q |
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| T |
24885385 |
ggccactaagcctgattttcttcttctacttcttcatcctcttccccaggagatcgctacattcggtggccgacttcaacgcagattcaagccctttctt |
24885286 |
T |
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| Q |
499 |
atcgcactcgagctcagccaccctcttagtcaattcctctgcatatttgtgagtagcattaactattcctcgtacttggttagggcctggatttctttgt |
598 |
Q |
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| T |
24885285 |
atcgcgctcgagctcagccaccctcttagtcaattcctccgcatatttgtgagtagcattaactattcctcgtgcttggttagggcctggatttctttgt |
24885186 |
T |
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| Q |
599 |
ctttatgagaaaacttcatgatcacacccatctaaatttcatgcttgtccttgtaa |
654 |
Q |
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| T |
24885185 |
ctttatgagaacactccataatcacacccatctaaatttcatgcttgtccttgtaa |
24885130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 220; E-Value: 1e-120
Query Start/End: Original strand, 10 - 252
Target Start/End: Complemental strand, 24885775 - 24885532
Alignment:
| Q |
10 |
aacctactattagacatgaatgtttagaatgtatacccccgcataacgattagaacgatcactcatagatccccaaagtaaaacgacacttaaagtcctc |
109 |
Q |
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| T |
24885775 |
aacctactattagacatgaatgtttataatgtatacccccgcataatgattagaacgatcactcatagatccccaaagtaaaacgacacttaaagtcctc |
24885676 |
T |
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| Q |
110 |
acttcattatttaatgaagagacaaaattggggaggaa-ggcaccatacaaatctaatctagttgaaatttaaatccttgattaaaatttgatcctacga |
208 |
Q |
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| T |
24885675 |
acttcattatttaatgaagagacaaatttggggaggaagggcaccatacaaatctaatctagttgaaatttaaatccttgattaaaatttgatcctacga |
24885576 |
T |
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| Q |
209 |
attatctaattattattagattgacttagcgtcaacgacttgtt |
252 |
Q |
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| T |
24885575 |
attatctaattattgttagattgacttagcgtcaacgacttgtt |
24885532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 57 - 113
Target Start/End: Original strand, 30438280 - 30438336
Alignment:
| Q |
57 |
gattagaacgatcactcatagatccccaaagtaaaacgacacttaaagtcctcactt |
113 |
Q |
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| T |
30438280 |
gattagaacgatcacatctagatccccaaagtaaaataacacttaaagtcttcactt |
30438336 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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