View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5340-Insertion-4 (Length: 650)
Name: NF5340-Insertion-4
Description: NF5340
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5340-Insertion-4 |
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Alignment Details
Target: chr1 (Bit Score: 601; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 601; E-Value: 0
Query Start/End: Original strand, 8 - 649
Target Start/End: Complemental strand, 39746141 - 39745496
Alignment:
| Q |
8 |
tatacgtagtccaattcctcttcaactgcaatgcaacattcttgtagcacatttgggtcaagtggggccccttttgtaccataatgaagaatttcccagt |
107 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
39746141 |
tatacgtagtccaattcctcttcaactgcaatgcaacattcttgtagcacatttgggtcaagtgggtccccttttgtaccataatgaagaatttcccagt |
39746042 |
T |
|
| Q |
108 |
acaatacgtagtgtcctggtactgaacaagtatcagcatagctagtgtattccactaggagtgcatcatagggttctaataactttttggccattgtcgc |
207 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | |
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| T |
39746041 |
acaatacgtagtgtcctggtactgaacaagtatcagcatagctagtgtattccactaggagtgcatcatagggttctaataactttttggacattgtcac |
39745942 |
T |
|
| Q |
208 |
acttctatgtaaatcctcttcatttgtcttttcactgtcaatgcttattactacgtttcttctacatatgaatcgaaattgtggggctttgttgtggaaa |
307 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39745941 |
acttctatgtaaatcctcttcatttgtcttttcactgtcaatgcttattactacgtttcttctacatatgaatcgaaattgtggggctttgttgtggaaa |
39745842 |
T |
|
| Q |
308 |
gcaaccacttgaagtacatcaccaactctgtatctatacagccctgtaaattaattgggatgatattata----catatattagtaaatgaatataatga |
403 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
39745841 |
gcaaccacttgaagtacatcaccaactctgtatctatacagccctgtaaattaattgggatgatattatacatacatatattagtaaatgaatataatga |
39745742 |
T |
|
| Q |
404 |
tttaaacaaattggttatgttacttagacttcaaaacccaatgcagctcaattaatataagaatatgggttgtgtgcggtcacaagtcgtctctgcactc |
503 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
39745741 |
tttaaacaaattggttatgttacttagacttcaaaacccaatgcagctcaattaatataagaatatgggttgtgtgcggccacaagtcgtctctgcactc |
39745642 |
T |
|
| Q |
504 |
ggtcaaccatacctgaagattagatggtccagatttcaagctcggtattttagatttaaaaaataatcaaaatttgtattgcaatttggaccgtccaatt |
603 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39745641 |
ggtcaaccatacctgaagattagatggtccagatttcaagttcggtattttagatttaaaaaataatcaaaatttgtattgcaatttggaccgtccaatc |
39745542 |
T |
|
| Q |
604 |
ttgaccggacacacaaatatgcgtcaattaattgggagcttactta |
649 |
Q |
| |
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|||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
39745541 |
ttgaccggacacacaaatatgcctcaattaattgggagcttactta |
39745496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 90; Significance: 4e-43; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 8 - 113
Target Start/End: Original strand, 7035391 - 7035496
Alignment:
| Q |
8 |
tatacgtagtccaattcctcttcaactgcaatgcaacattcttgtagcacatttgggtcaagtggggccccttttgtaccataatgaagaatttcccagt |
107 |
Q |
| |
|
||||| || |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
7035391 |
tatacataatccaattcctcttcaactgcaatgcaacatccttgtagcacatttgggtcaagtgggtccccttttgtaccataatgaagaatttcccagt |
7035490 |
T |
|
| Q |
108 |
acaata |
113 |
Q |
| |
|
|||||| |
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|
| T |
7035491 |
acaata |
7035496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 519 - 565
Target Start/End: Complemental strand, 45091524 - 45091478
Alignment:
| Q |
519 |
aagattagatggtccagatttcaagctcggtattttagatttaaaaa |
565 |
Q |
| |
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|||||||||||||| |||||||||| || |||||||| ||||||||| |
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|
| T |
45091524 |
aagattagatggtctagatttcaagttcagtattttaaatttaaaaa |
45091478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 526 - 602
Target Start/End: Complemental strand, 45862208 - 45862132
Alignment:
| Q |
526 |
gatggtccagatttcaagctcggtattttagatttaaaaaataatcaaaatttgtattgcaatttggaccgtccaat |
602 |
Q |
| |
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|||| |||||||||||||||| |||| || |||||||| |||| |||||| || |||| ||| ||||||||||||| |
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|
| T |
45862208 |
gatgatccagatttcaagctctgtatgttttatttaaaacataagcaaaatctgcattgaaatctggaccgtccaat |
45862132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 528 - 566
Target Start/End: Original strand, 10558680 - 10558718
Alignment:
| Q |
528 |
tggtccagatttcaagctcggtattttagatttaaaaaa |
566 |
Q |
| |
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||||| ||||||||||||||||||||||||||| ||||| |
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| T |
10558680 |
tggtctagatttcaagctcggtattttagattttaaaaa |
10558718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 522 - 566
Target Start/End: Original strand, 43727353 - 43727397
Alignment:
| Q |
522 |
attagatggtccagatttcaagctcggtattttagatttaaaaaa |
566 |
Q |
| |
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|||||||||| | |||||||||||| |||||||||||||||||| |
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|
| T |
43727353 |
attagatggttcgaatttcaagctcgatattttagatttaaaaaa |
43727397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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