View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5340-Insertion-5 (Length: 636)
Name: NF5340-Insertion-5
Description: NF5340
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5340-Insertion-5 |
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Alignment Details
Target: chr4 (Bit Score: 535; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 535; E-Value: 0
Query Start/End: Original strand, 8 - 630
Target Start/End: Original strand, 51390279 - 51390880
Alignment:
| Q |
8 |
tttaggtcatcttagtggtatacttgctggacttgtgtatttgagattcagacgaaatttctcgggttcaaatccgttgaattctattgttaggggtttt |
107 |
Q |
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| T |
51390279 |
tttaggtcatcttagtggtatacttgctggacttgtgtatttgagattcagacgaaatttctcgggttcaaatccgttgaat------------------ |
51390360 |
T |
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| Q |
108 |
aattctatttttagggggtttaattctgtgttgaattggcctgtgaagttttttagggatttgtttgggtttaggagagaaaggattactggtaggggaa |
207 |
Q |
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| T |
51390361 |
---tctattgttaggggttttaattctgtgttgaattggcctgtgaagttttttagggatttgtttgggtttaggagagaaaggattactggtaggggaa |
51390457 |
T |
|
| Q |
208 |
ctgtcggccgtacggggaggaatgctgcccgggttgctgctgattggagatgtcaggcttgtacttatgataattctggtttgatgaatgtgtgtgagat |
307 |
Q |
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| T |
51390458 |
ctgtcggccgtacggggaggaatgctgcccaggttgctgctgattggagatgtcaggcttgtacttatgataattctggtttgatgaatgtgtgtgagat |
51390557 |
T |
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| Q |
308 |
gtgtggtactagtagagttggtggtggtggttcttctgatgaaatgaaccgccgtgattattatgattctgatggtctttctttggatgaattgcgtcgc |
407 |
Q |
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| T |
51390558 |
gtgtggtactagtagggttggtggtggtggttcttctgatgaaatgaaccgccgtgattattatgattctgatggtctttctttggatgaattgcgtcgc |
51390657 |
T |
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| Q |
408 |
aggagaattgaaaggtttggtaggtgatgaaatgtaatcatgatgatagtagaaatgaaatattaacaaataatgcaattggatgtagaaatttagttca |
507 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51390658 |
aggagaattgaaaggtttggtaggtgatgaaatgtaatcatgatgatagtagaaatgaaatattaacaaataatgcaattggatgtagaaatttagttca |
51390757 |
T |
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| Q |
508 |
ttctattggatattagacctgtttttattttagatggatataagtttgttgtgtaactagagctgatgatactgcaacgaattattacatcaatttagcg |
607 |
Q |
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| T |
51390758 |
ttctattggatattagacttgtttttattttagatggatataagtttgttgtgtaactagagctgatgatactgcaacgaattattacatcaatttagcg |
51390857 |
T |
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| Q |
608 |
agttacatttacattacattttt |
630 |
Q |
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| T |
51390858 |
agttacatttacattacattttt |
51390880 |
T |
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