View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5340-Insertion-6 (Length: 333)

Name: NF5340-Insertion-6
Description: NF5340
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5340-Insertion-6
NF5340-Insertion-6
[»] chr2 (1 HSPs)
chr2 (8-333)||(45170260-45170585)


Alignment Details
Target: chr2 (Bit Score: 310; Significance: 1e-175; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 310; E-Value: 1e-175
Query Start/End: Original strand, 8 - 333
Target Start/End: Original strand, 45170260 - 45170585
Alignment:
Q  8 tttaggaagaaacgtattgcgaagaaagctaacaactacaagcaaagttcaaaaaacgagagcaagaaatcagaaaccagatcggatgttagaaatcaga 107  Q
    ||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45170260 tttaggaagaaacatattgcgaagaaagctaacaactacaagcaacgttcaaaaaacgagagcaagaaatcagaaaccagatcggatgttagaaatcaga 45170359  T
Q  108 gtgtagatgtaaatgaaacaaatggcagtttaccttatgataaattttttgtgcgcctatttaacggaggtgtgactaaagcaaatgtcagtaatgcaac 207  Q
    |||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45170360 gtgtagatgtaaatgaaacaaatggcagtttatcttatgataaaatttttgtgcgcctatttaacggaggtgtgactaaagcaaatgtcagtaatgcaac 45170459  T
Q  208 aaaggaaacaagaacatcatcgagcagcactgaccttcgtgatagcaatacagcaaacaggaagaggaagacagatttggcaggaaaaagaagctctcct 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45170460 aaaggaaacaagaacatcatcgagcagcactgaccttcgtgatagcaatacagcaaacaggaagaggaagacagatttggcaggaaaaagaagctctcct 45170559  T
Q  308 aagagagcatggtcttctgattattg 333  Q
    ||||||||||||||||||||||||||    
T  45170560 aagagagcatggtcttctgattattg 45170585  T

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