View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5340_high_10 (Length: 238)
Name: NF5340_high_10
Description: NF5340
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5340_high_10 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 18 - 238
Target Start/End: Complemental strand, 43253119 - 43252899
Alignment:
| Q |
18 |
ttagctaagttgataaaaatattgaaggactgtatctctagatcatgctgcttataagtttatgatatgctcatgtgtttttgaaaacaaaacaatgaga |
117 |
Q |
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| T |
43253119 |
ttagctaagttgataaaaatattgaagaactgtatctctatatcatgctgcttataagtttatgacatgctcgtgtgtttttgaaaacaaaacaatgaga |
43253020 |
T |
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| Q |
118 |
gatgagattaaatctcaacgagttccatggaacaaacataattaactagtcgaatgaactttgtacctattacgtttaccattatttggagtgtagatgt |
217 |
Q |
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|||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
43253019 |
gatgagattaaatctcaatgagttccatgggacaaacataattaactagtcgaatgaactttgtacctattacgttcaccattatttggagtgtagatgt |
43252920 |
T |
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| Q |
218 |
gacaactccctctctctcttt |
238 |
Q |
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||||||||||||||||||||| |
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| T |
43252919 |
gacaactccctctctctcttt |
43252899 |
T |
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