View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5340_high_4 (Length: 356)
Name: NF5340_high_4
Description: NF5340
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5340_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 18 - 345
Target Start/End: Original strand, 30528674 - 30529001
Alignment:
| Q |
18 |
ttcatttcattattttttccaacaaagttgtctgtaaaagcctgagagaaaggaaagaagagggtccaacaactacaaacaagagggcaattctttttag |
117 |
Q |
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| T |
30528674 |
ttcatttcattattttttccaacaaagttgtctgtaaaagcctgagagaaaggaaagaagagggtccaacaactacaaacaagagggcaattctttttag |
30528773 |
T |
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| Q |
118 |
aagaaattacnnnnnnnnnnnnnnnnnnnnngtgttattaggtgggtccataatgctatatacatatggttgcaaatttgctgtgtttagttgcaaaatt |
217 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30528774 |
aagaaattacaaaaataaaaaattaaataaagtgttattaggtgggtccataatgctatatacatatggttgcaaatttgctgtgtttagttgcaaaatt |
30528873 |
T |
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| Q |
218 |
taatttagtcaataatgaaccgttatgagatactagtattgaatgaagactgcatttggattggattagggtttaatgatttaacactaaagcacaaagt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
30528874 |
taatttagtcaataatgaaccgttatgagatactagtattgaatgaagactgcatttggattggattagggtttaatgatttaacactaaagcataaagt |
30528973 |
T |
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| Q |
318 |
tgatgtgtaatgattttgtttctctgct |
345 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
30528974 |
tgatgtgtaatgattttgtttctctgct |
30529001 |
T |
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