View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5340_high_6 (Length: 261)
Name: NF5340_high_6
Description: NF5340
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5340_high_6 |
 | |
|
| [»] chr2 (2 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 177; Significance: 2e-95; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 13 - 261
Target Start/End: Original strand, 43468310 - 43468557
Alignment:
| Q |
13 |
aatatcaacacagacattcttaaagaagggttaacctaggttctgaagacaaatgtatgtattcattattttatggtaagaaaatcaatcaattatgaga |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| |
|
|
| T |
43468310 |
aatatcaacacagacattcttaaagaagggttaacctaggttctgaagacaaatgtatgtattcattattttatggtaagaaaaccaatcgattatgaga |
43468409 |
T |
|
| Q |
113 |
aaatatattcaacaaaatggatatatagcttactgttacacattccagaagtcttttatattaacgaccaatcaaaaaagtatatatatgtgcgtgtgcc |
212 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || | | | | || | | |
|
|
| T |
43468410 |
aaatatattcaacaaaatagatatatagcttactgttacacattccagaagtcttctatattaacgaccaatcaaaaaataatgtttgtttctatgag-c |
43468508 |
T |
|
| Q |
213 |
tatctgcgtggatatgtatgtaaactgaatatttaggtctgataaaaga |
261 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
43468509 |
tatctgtgtggatatgtatgtaaactgaatatttaggtctcataaaaga |
43468557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 66
Target Start/End: Original strand, 43477383 - 43477430
Alignment:
| Q |
19 |
aacacagacattcttaaagaagggttaacctaggttctgaagacaaat |
66 |
Q |
| |
|
|||| |||||||||||| ||||||||||||||| |||||||||||||| |
|
|
| T |
43477383 |
aacaaagacattcttaacgaagggttaacctagattctgaagacaaat |
43477430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University