View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5340_high_7 (Length: 260)
Name: NF5340_high_7
Description: NF5340
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5340_high_7 |
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Alignment Details
Target: chr8 (Bit Score: 176; Significance: 7e-95; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 16 - 252
Target Start/End: Complemental strand, 4615384 - 4615148
Alignment:
| Q |
16 |
aaatcttgtagattttctaaagttttacaaacatatgnnnnnnnnatttatcttttgatcatatttaaaatgattctcttcttaaataagttagttttaa |
115 |
Q |
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| T |
4615384 |
aaatcttgtagattttctaaatttttacaaacatatgtttttttattttatcttttgatcatatttaaaatgattctcttcttaaataagttagttttaa |
4615285 |
T |
|
| Q |
116 |
aattatttctttcatttgtatttgtaagcttttttatttgaaatatcaaagtagtcattttaacacaatatttcaacacacaacctcttataaattactg |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
4615284 |
aattatttctttcatttgtatttgtaagcttttttatttgaaatatcaaagtagtcattttaacacaatatttcaacacacaacctcttataaattagtg |
4615185 |
T |
|
| Q |
216 |
aatcacgccannnnnnnctatgaaggaaagtattatc |
252 |
Q |
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|||||||||| |||||||||||||| ||||| |
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| T |
4615184 |
aatcacgccattttttcctatgaaggaaagtgttatc |
4615148 |
T |
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