View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5340_low_1 (Length: 449)
Name: NF5340_low_1
Description: NF5340
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5340_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 8 - 434
Target Start/End: Original strand, 8876362 - 8876787
Alignment:
| Q |
8 |
attattctgatcgacatggttgtgatgtgccttttatgtatcttttttatcattaagttgtggggtgtttgacactggattttctattacattggttatc |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8876362 |
attattctgatcgacatggttgtgatgtgccttttatgtatctttt-tatcattaagttgtggggtgtttgacactggattttctattacattggttatc |
8876460 |
T |
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| Q |
108 |
attttttcatctttgaaagcttctatagcctttaaatttatttatacttgatcatgttgacaactagtaaactgagaggaagatcttatctgagaaaact |
207 |
Q |
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| T |
8876461 |
attttttcatctttgaaagcttctatagcctttaaatttatttatacttgatcatgttgacaactagtaaactgagacgaagatcttatctgagaaaact |
8876560 |
T |
|
| Q |
208 |
ttgtatttatacaaatacaaagttatgatgattgatcttctgcaggctcttacttgctagttcattccaacctctagttcagcctccaaagttacgatga |
307 |
Q |
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| T |
8876561 |
ttgtatttatacaaatacaaagttatgatgattgatcttctgcaggctcttacttgctagttcattccaacctctagttcagcctccaaagctacaatga |
8876660 |
T |
|
| Q |
308 |
tgattagttaaagataatgaagnnnnnnnnnnnnnagtatatgatgtatgatctttatagtgtagggaaccatttacattgcataggacaatttgtttgg |
407 |
Q |
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| T |
8876661 |
tgattagttaaagataatgaagttttttagtttttagtatatgatgtatgatctttgtagtgtagggaaccatttacaatgcataggacaatttgtttgg |
8876760 |
T |
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| Q |
408 |
gtgaatcaagatgctatagaggtagtt |
434 |
Q |
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| T |
8876761 |
gtgaatcaagatgctatagaggtagtt |
8876787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 10 - 329
Target Start/End: Complemental strand, 9394638 - 9394312
Alignment:
| Q |
10 |
tattctgatcgacatggttgtgatgtgccttttatgtatcttttttatcattaagttgtggggtgtttgacactggattttctattacattggttatcat |
109 |
Q |
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|||||||||| | |||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
9394638 |
tattctgatcaatatggatgagatgtgccttttatgtatcttttttatcattaagttgtggggtgtttgacactggattttctattacattggttatgat |
9394539 |
T |
|
| Q |
110 |
tttttcatctttgaaagcttctatagcctttaaatttatttatacttgatcatgttgacaactagtaaactgagaggaagatcttatctgagaaaacttt |
209 |
Q |
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| T |
9394538 |
tttttcatctttgaaagcttgtatagcctttaaatttatttcaacttgatcatgttgacaacttgtaaattgagacaaagatcttatatgagaaaacttt |
9394439 |
T |
|
| Q |
210 |
gtatttatacaaatacaaagttatgatgattgatcttctgcaggctct-------tacttgctagttcattccaacctctagttcagcctccaaagttac |
302 |
Q |
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| T |
9394438 |
gtatttatacaaatacagagttatgatcattgatcttctgcatgctcttgaacactacttgctagttcattccaacctctagttcggcctccaaagttac |
9394339 |
T |
|
| Q |
303 |
gatgatgattagttaaagataatgaag |
329 |
Q |
| |
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| | ||||||||||||||||||||||| |
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| T |
9394338 |
ggtaatgattagttaaagataatgaag |
9394312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 358 - 434
Target Start/End: Complemental strand, 9394249 - 9394170
Alignment:
| Q |
358 |
atctttatagtgtagggaaccatttacattgcataggacaatttgtttgggtgaatc---aagatgctatagaggtagtt |
434 |
Q |
| |
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|||||||||||| ||||||||||||||| |||||| |||||||||||||||||||| |||||||||||||||||||| |
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| T |
9394249 |
atctttatagtgcagggaaccatttacaatgcatattacaatttgtttgggtgaatcaagaagatgctatagaggtagtt |
9394170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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