View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5340_low_10 (Length: 240)
Name: NF5340_low_10
Description: NF5340
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5340_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 171; Significance: 6e-92; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 18 - 192
Target Start/End: Complemental strand, 26126845 - 26126671
Alignment:
| Q |
18 |
aatatcaacttcaataattgagcaatgtcactcacagcagtgttctatccacattgcctaatttactcctaaagattcaagagatcttttagcattagta |
117 |
Q |
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| T |
26126845 |
aatatcaacttcaataattgagcaatgtcactcacagcagtgttctatccacattgcctaatttactcctaaagattcaagagatcttttagcattagta |
26126746 |
T |
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| Q |
118 |
cagaaaggtttgtaaccttttagcgtttcctctcaaaactgaaacataagtatattccaaattcattactcatta |
192 |
Q |
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| T |
26126745 |
cagaaaggtttgtaaccttttggcgtttcctctcaaaactgaaacataagtatattccaaattcattactcatta |
26126671 |
T |
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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 180
Target Start/End: Complemental strand, 45512893 - 45512837
Alignment:
| Q |
124 |
ggtttgtaaccttttagcgtttcctctcaaaactgaaacataagtatattccaaatt |
180 |
Q |
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| T |
45512893 |
ggtttgtaacattttggcattccctctcaaaactgaaacataggtgtattcctaatt |
45512837 |
T |
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